Luteibacter aegosomatis: L2Y94_09405
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Entry
L2Y94_09405 CDS
T09054
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
laeg
Luteibacter aegosomatis
Pathway
laeg03030
DNA replication
laeg03410
Base excision repair
laeg03420
Nucleotide excision repair
laeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2Y94_09405 (ligA)
03410 Base excision repair
L2Y94_09405 (ligA)
03420 Nucleotide excision repair
L2Y94_09405 (ligA)
03430 Mismatch repair
L2Y94_09405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laeg03032
]
L2Y94_09405 (ligA)
03400 DNA repair and recombination proteins [BR:
laeg03400
]
L2Y94_09405 (ligA)
Enzymes [BR:
laeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L2Y94_09405 (ligA)
DNA replication proteins [BR:
laeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L2Y94_09405 (ligA)
DNA repair and recombination proteins [BR:
laeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L2Y94_09405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2Y94_09405 (ligA)
MMR (mismatch excision repair)
DNA ligase
L2Y94_09405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L2Y94_09405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
DUF7501
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UPG87546
LinkDB
All DBs
Position
2039133..2041523
Genome browser
AA seq
796 aa
AA seq
DB search
MSQSTAPAEAIERAADLRRRIEDANYRYHVLDDPSIADAEYDRLVRELEALEGQYAELAT
PDSPTRKVGARAQGGFAEVVHAVPMLSLGNAFEQEGDTDREKYREVADFERRIEQTLDRR
EPVFSVEPKLDGLAISLRYENGVFVQGATRGDGAVGEDVTANLRTVRAIPLRLRGEGWPR
VLEVRGEVIMPRAAFEAFNARAREAGEKPLANPRNGAAGSLRQLDPAITAKRPLAFFAYA
VGVVEGGELPDTHSATLAKLREWGFPVSPEVSTAKGFDGLIRYFRKIGEKRDGLPYDIDG
VVYKLDDYEGQREMGFVSRAPRWAIAHKYPAQEQMTVVEGIEIQIGRTGAATPVARLAPV
QVGGVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVARVVDERRPEGTEPWSMPR
TCPVCGSELLREEGAAAYRCSGGLICGAQRKEAIIHFASRRAMDIDGLGDRFVDALVELG
MVHTPADLYDLTVEKFVEMKRLADERDGTTPETVKQGKVATKWAENLVASIEASKRSTLP
RFLFALGIMHIGESTAKTLALWLGSLEAVRRTPKPVLRVLPDIGEEVATSIAAFFGQEGN
EKVVDALLAAGIVFADESAPSPKLRERLGLDVLLDAAKIPKLGPKNTALLAKHYKSVADL
AQAGEHHWIIAGVPSAAASNLWGYLSDPTHYRQLTNDFADMQWLLDRLPATSASALPLEG
HTYVITGTLATLKRDDATERLESLGAKVAGSVSKKTTAVFAGEAAGSKLDKARELGVPVH
DEAALLALLTEHGVAP
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtccaccgcccccgccgaggccatcgagcgcgccgccgacctgcgccgccgc
atcgaggacgcgaactaccgttatcacgtgctcgacgatccgagcatcgccgacgccgaa
tacgatcgcctggtgagggaactggaagcgctggaaggccagtacgccgaactggccacg
ccggactcgcccacccgcaaggtcggtgcccgcgcgcagggcggtttcgccgaggtggtg
catgccgtgcccatgctctcgctgggcaacgccttcgagcaggaaggcgacaccgatcgc
gaaaaatatcgcgaagtggccgacttcgagcgccgcatcgagcagacgctggatcgacgc
gaaccggtgttttcggtggagcccaagctggacggcctggcgatcagcctgcgttacgag
aacggcgtgttcgtgcagggcgccacgcgaggcgacggcgcggtgggcgaagacgtcacc
gccaacctgcgcaccgtgagggccattccgctgcgcttgcgtggcgaaggctggccgcgc
gtgctcgaggtgcgcggcgaggtgatcatgccgcgcgccgccttcgaggccttcaacgcg
cgggcccgcgaggccggcgaaaaaccgctcgccaacccgcgcaacggcgccgccggttcg
ctgcgccagctcgatccggcgatcacggcgaagcggccgctggccttcttcgcctatgcc
gtgggcgtggtcgagggcggcgaactgcccgacacgcattcggccacgctggcgaaactg
cgcgaatggggttttccggtgtcgccggaggtatccacggccaagggtttcgacggcctc
atccgctacttccgcaagatcggcgaaaaacgtgacggcctgccttacgacatcgacggc
gtggtctacaagctcgacgactacgaaggccagcgcgagatgggtttcgtctcgcgcgcg
ccgcgctgggccatcgcgcacaagtatcccgcgcaggaacagatgaccgtggtcgagggc
atcgagatccagatcggccgcacgggcgcggccacgcccgtggcgcgtctcgcgccggtg
caggtgggcggcgtcaccgtcaccaacgccacgctgcacaacgccgaccaggtggcgcgc
ctcgacgtgcgcgtgggcgataccgtgatcgtgcgccgcgcgggcgacgtcattcccgag
gtggcgcgcgtggtcgacgagcgccgtcccgaaggtaccgagccctggtcgatgcccagg
acgtgtcccgtgtgcggttccgaattgctgcgcgaggaaggcgcggccgcttatcgatgc
tccggggggctgatctgcggggcgcagcgcaaggaggcgatcatccacttcgcgtcgcgc
cgcgccatggacatcgatggcctcggcgaccgcttcgtcgatgcgctggtcgaactgggc
atggtgcatacgccggccgatctctacgacctcaccgtggagaagttcgtggagatgaag
cgcctcgccgacgagcgcgacggcaccacgccggaaaccgtgaagcagggcaaggtcgcc
accaagtgggcggaaaacctcgtcgcctccatcgaggccagcaagcgatccacgctgccg
cgtttcctgttcgcgctgggcatcatgcacatcggcgagagcacggcgaagacgctcgcg
ctgtggctgggatcgctcgaggcggtgcgccgcacgcccaagccggtgctgcgcgtgctg
cccgacatcggcgaagaggtggcgacctccatcgcggcattcttcggccaggagggcaac
gagaaggtggtcgacgcactgctggcggcgggcatcgtcttcgccgacgaatccgcgccg
tcgcccaagttgcgcgagcgactggggctggacgtactgctcgacgcggcgaaaatcccg
aagctgggcccgaagaacacggccttgctcgcgaagcactacaagagcgtggcggacctg
gcccaggccggggaacaccactggatcatcgccggcgtgccctcggccgccgcgtcgaac
ctgtggggctacctgagcgatccgacgcactatcgccagctcaccaacgacttcgccgac
atgcagtggctgctcgaccgcttgcccgcgacatccgcgtccgcgttaccgctcgaaggc
cacacctacgtcatcaccggcacgctggccacgctcaagcgcgacgatgccacggagcgg
ctggagtcgctgggcgcgaaggtcgccggctccgtgtcgaagaagaccacggccgtgttc
gccggtgaggcggccggttccaagctcgacaaagcccgggaactcggcgtgccggttcac
gacgaagccgcgctgctggcgttgctgaccgagcatggggtcgcgccatga
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