Luteibacter aegosomatissinici: L2Y97_13655
Help
Entry
L2Y97_13655 CDS
T09055
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03030
DNA replication
laeo03410
Base excision repair
laeo03420
Nucleotide excision repair
laeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2Y97_13655 (ligA)
03410 Base excision repair
L2Y97_13655 (ligA)
03420 Nucleotide excision repair
L2Y97_13655 (ligA)
03430 Mismatch repair
L2Y97_13655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laeo03032
]
L2Y97_13655 (ligA)
03400 DNA repair and recombination proteins [BR:
laeo03400
]
L2Y97_13655 (ligA)
Enzymes [BR:
laeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L2Y97_13655 (ligA)
DNA replication proteins [BR:
laeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L2Y97_13655 (ligA)
DNA repair and recombination proteins [BR:
laeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L2Y97_13655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2Y97_13655 (ligA)
MMR (mismatch excision repair)
DNA ligase
L2Y97_13655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L2Y97_13655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
UPG92911
LinkDB
All DBs
Position
complement(3047126..3049516)
Genome browser
AA seq
796 aa
AA seq
DB search
MPQAIAPIDAAKRAADLRRRIEDANYKYHVLDDPDIADAEYDKLMRELEALESQYADLAT
DDSPTRRVGARAHGGFAEVTHAVPMLSLGNAFETEGDSDREKYREVADFERRIEQTLGRT
KPVFSVEPKLDGLAISLRYESGVFVQGATRGDGAVGEDVTANLRTVKAIPLRLRGEGWPR
VLEVRGEVIMPRAGFEAFNERARAAGEKPLANPRNGAAGSLRQLDPGITAKRPLAFFAYA
VGRVEDGELPATHSATLQKLREWGFPVSPEVSTAAGFEGLIAYFRKIGAKRDGLPYDIDG
VVYKLDDYEGQQEMGFVSRAPRWAIAHKYPAQEQMTTVEGIEIQIGRTGAATPVARLTPV
QVGGVTVTNATLHNADQIARLDVRVGDTVIVRRAGDVIPEVARVVDDRRPEGTVPWHMPA
VCPVCNSELIREEGAAAYRCSGGLICAAQRKEALIHFASRRAMDIDGLGDRFVDALVEFD
MVKTPADLYSLTVESFVDMKRRADERDGTTPETVKQGKVATKWAENLVESIEASKRSTLP
RFLFGLGIMHIGESTAKTLALWLGSLAVVRRTPAPVLRVLPDIGDEVATSIATFFEQEGN
EKVVDALLAAGITFADEGAPSPKLRDRLGLDVLLDSAKIPKLGPKSTALLGKQYASLEAL
VKASEHQWIVAGVPQAAASNLTAYLADPKQAAELARNDWAMRALLDALPATSVAALPLEG
HTYVITGTMETLKRDDATERLESLGAKVAGSVSKKTTAVFAGEAAGSKLDKANELGIPVH
TEADLIALLSEHGVAP
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagccatcgcccccatcgacgccgccaagcgcgccgccgacctccgccgccgc
atcgaggacgcgaactacaagtaccacgtgctggatgacccggatatcgccgatgccgag
tacgacaagctcatgcgtgagctggaagcactggaatcgcaatacgccgacctcgctacc
gatgactcacccacccgccgcgtgggcgcgcgtgcccacggtggcttcgccgaggtaacg
catgccgtgcccatgctctcgctgggcaacgcgttcgaaaccgagggcgattcggatcgc
gaaaagtaccgtgaggtcgccgatttcgaacgccggatcgagcagaccctcggccgcacc
aagcccgtgttctcggtggagcccaagctggatggcctggccatcagcctgcgctacgag
agcggcgtgttcgtgcagggtgcgacccgtggcgatggcgccgtgggcgaggatgtgacc
gccaacctgcgcacggtgaaagccattccattgcgcctgcgcggcgaaggctggccgcgc
gtccttgaggtgcgcggtgaggtcatcatgccccgcgccggcttcgaggccttcaacgag
cgtgcgcgtgcggcgggcgaaaagccgctggccaatcctcgtaatggtgcggcgggttcc
ttgcgccagctcgatccaggcatcacggcgaagcgtcccctggcctttttcgcctacgcg
gtgggccgcgtggaagacggggagctgccggcgacgcactcggccacgctccagaagctg
cgcgaatggggctttccggtatcgccggaagtgtcgacggcggcagggttcgaaggcctc
atcgcgtacttccgcaagatcggcgcgaagcgcgatggcctgccgtacgacatcgatggc
gtggtctacaagctggatgattacgaaggccagcaggagatgggcttcgtctcccgcgcg
ccacgctgggccatcgcgcacaagtatccggcgcaggaacagatgaccacggtggagggg
atcgagatccagatcggccgcacgggcgccgccacgcccgttgcccggctcacccccgtg
caggtcggcggtgtgaccgtcaccaatgccacgctacacaacgcggatcagattgcgcgc
ctcgatgtgcgtgtgggcgataccgtgatcgtgcgccgcgccggcgatgtgatccccgaa
gtagcccgcgtggtggacgatcgccgccccgaaggcaccgtgccgtggcatatgccggcc
gtttgcccggtgtgcaactcggaactgatccgcgaggaaggggcggcggcctatcgctgc
tcgggcggccttatctgcgccgcgcaacggaaagaggcattgatccacttcgcctcgcgg
cgcgccatggatatcgatgggctgggcgatcgcttcgtcgatgcgctggtcgagttcgac
atggtgaagacacctgccgacctctacagcctcaccgtggaaagctttgttgatatgaag
cgccgcgctgatgagcgcgacggcaccacgccggagaccgtgaagcagggcaaggtcgcg
acgaagtgggccgaaaacctggtcgagtccatcgaggctagcaagcgctccacgctaccg
cggttcctgttcggcctgggcatcatgcatatcggcgagagcacggcgaaaacgctggcc
ttgtggctgggttcgctcgcggtcgtgcggcgcacgcctgcgccggtgctgcgcgtgctt
ccggatattggtgatgaggtggcgacatccatcgccactttcttcgagcaggaggggaac
gagaaggtcgtcgatgcgctgctggccgcgggaatcacatttgccgacgagggcgcgcca
tcaccgaaactccgcgatcgccttggcctggacgtgctgctggattcggcgaagatcccg
aagctggggcccaagagcacggccttgctcggtaagcagtacgcttcgctggaagcgctg
gtgaaggccagcgagcaccagtggatcgtggccggcgtgccgcaggccgccgcatcgaac
cttaccgcgtacctcgccgatccgaagcaggccgctgagctggcccgtaacgactgggcc
atgcgtgcgctgcttgatgcgctgccggcgacatcggtcgcggcgctgccattggaaggc
cacacgtacgtgatcaccggcaccatggaaacactcaagcgcgatgacgcaacggagcgc
ctggaatcactgggagccaaggtcgccggttccgtatcgaagaagaccaccgctgtgttc
gcgggcgaggctgccggctcaaagctggacaaggccaacgagctgggtatccctgtccat
accgaggccgatctgatcgcactgctcagtgaacacggcgtggcgccatga
DBGET
integrated database retrieval system
