Luteibacter aegosomaticola: L2Y96_13270
Help
Entry
L2Y96_13270 CDS
T09073
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
laes
Luteibacter aegosomaticola
Pathway
laes03030
DNA replication
laes03410
Base excision repair
laes03420
Nucleotide excision repair
laes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2Y96_13270 (ligA)
03410 Base excision repair
L2Y96_13270 (ligA)
03420 Nucleotide excision repair
L2Y96_13270 (ligA)
03430 Mismatch repair
L2Y96_13270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laes03032
]
L2Y96_13270 (ligA)
03400 DNA repair and recombination proteins [BR:
laes03400
]
L2Y96_13270 (ligA)
Enzymes [BR:
laes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L2Y96_13270 (ligA)
DNA replication proteins [BR:
laes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L2Y96_13270 (ligA)
DNA repair and recombination proteins [BR:
laes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L2Y96_13270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2Y96_13270 (ligA)
MMR (mismatch excision repair)
DNA ligase
L2Y96_13270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L2Y96_13270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
PRA-PH
Frankia_peptide
Zn_ribbon_PADR1
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UPG88391
LinkDB
All DBs
Position
complement(3008544..3010934)
Genome browser
AA seq
796 aa
AA seq
DB search
MSQAIAPIEAAARASELRRLIEDANYKYHVLDDPDLADAEYDKLMRELEALESQYADLAT
DDSPTRRVGARAHGGFAEVTHAVPMLSLGNAFETEGDTDREKYREVADFERRIEQTLGRA
KPVFSVEPKLDGLAISLRYENGVFVQGATRGDGAVGEDVTANLRTVKAIPLRLRGEGWPR
VLEVRGEVIMPRAGFEAFNERARATGEKPLANPRNGAAGSLRQLDPAITAKRPLAFFAYA
VGRVEGGELPQTHSATLQQLRAWGFPVSPEVSTASGFDGLIAYFRKIGEKRDSLPYDIDG
VVYKLDDYAGQEEMGFVSRAPRWAIAHKYPAQEQMTTVEAIEIQIGRTGAATPVARLTPV
SVGGVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVARVVEDRRPEGTVAWQMPT
HCPVCNSEIIREEGAAAYRCSGGLICAAQRKEALIHFASRRAMDIDGLGDRFVDALVEFD
MVKTPADLYGLTVESFIDMKRRADERDGSTPETVKQGKVATKWAENLVESIEASKQSTLP
RFLFGLGIMHIGESTAKTLALWLGSLAMVRRTPAPVLRVLPDIGDEVATSIAAFFGQEGN
EKVVDALLDAGITFADEGAPSPKLRDRLGLDVLLDSARVAKLGPKSTALLSKQYGSLEAL
VKASEHQWIVAGVPQAAASNLTAYLANEKNAAELARTDWAMRTLLEALPAKSAAALPLEG
HTYVITGTMETLKRDDATERLESLGAKVAGSVSKKTTGVFAGEAAGSKLDKANELGIPVH
TEADLIALLETHGVAP
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagccatcgcccccatcgaagccgccgcgcgtgccagcgagcttcgccgcctc
atcgaggatgcgaactacaagtaccacgtgctcgatgatcccgaccttgccgacgccgaa
tacgacaagctcatgcgcgagcttgaagcgctggaaagccagtacgccgacctcgccacc
gatgactcgccgacccgccgcgtcggcgctcgcgcccacggtggcttcgccgaagtgacg
cacgctgtgcccatgctgtcgctgggcaatgcgttcgaaaccgaaggcgatacggaccgc
gagaagtatcgcgaagtcgctgatttcgagcgccgcatcgagcagacgctcggccgtgcc
aagccggtgttctccgtggaacccaagcttgatggcctcgccatcagcctccgctacgag
aacggcgtgttcgtgcagggcgcgacgcgtggtgatggcgcggtgggtgaggatgtcacg
gccaacctgcgtacggtgaaggcgattccgctgcgcctgcgtggggaaggctggccgcgt
gtgctcgaagtgcgcggtgaagtgatcatgccgcgcgcggggttcgaggccttcaacgag
cgcgcgcgtgcgaccggcgaaaagcccctggccaatccgcgtaacggcgcggcgggttcg
ctgcgtcagctggatcccgccatcacggcgaagcgcccgctggcattcttcgcttacgcc
gtgggccgcgtggaaggcggtgagctgccacaaacgcattcggccaccctgcagcagttg
cgtgcatggggtttcccggtgtcgccggaagtatcgacggcatccggtttcgacggcctg
atcgcttatttccgcaagatcggtgagaagcgcgacagcctgccgtacgacatcgatggc
gtggtctacaagctcgatgactacgccggtcaggaagagatgggttttgtttcccgtgcg
cctcgctgggccatcgcgcacaaatacccggcgcaggaacagatgacgacggtggaggcg
atcgagatccagatcggccgcaccggcgccgccacgcctgtcgcacgcctcacgccggtc
tcggtcggtggtgtcaccgtcaccaacgccacgctgcataacgccgaccaggtcgcgcgc
ctcgacgtgcgcgtcggcgatacggtgatcgtgcgccgcgcgggcgatgtcattcccgaa
gtggcgcgtgtggtcgaagaccgccgtcccgagggcacggtagcctggcagatgccgacg
cattgcccggtgtgcaactccgaaatcatccgggaagagggtgccgcggcgtatcgctgc
tcgggcggcctgatctgcgccgcgcagcgcaaggaagccctcatccacttcgcatcgcgc
cgtgccatggatatcgacggccttggcgatcgcttcgtcgatgcgttggtcgaattcgac
atggtgaagacgccggccgatctgtatggcctgaccgtggagagcttcatcgacatgaag
cgccgcgccgacgagcgcgatggctccacgccagagacggtgaagcagggcaaggtcgcc
acgaagtgggccgagaacctggtcgaatcgatcgaagccagcaagcagtccacgctgccg
cggttcctgttcggcctgggcatcatgcacatcggcgaaagcacagcgaagacgctggcc
ttgtggctcggctcgctggcaatggtccggcgcacgccggcgccggtgctgcgcgtgttg
cccgatatcggtgacgaagtcgcgacctccattgccgccttcttcgggcaggaaggtaac
gagaaggtcgtcgacgcgttgctggatgcaggcatcacctttgcggacgagggggcgccg
tcgccgaagctgcgcgatcgcctgggcctcgatgtgctgctcgattcggcccgcgtggcg
aaactcggccccaagagcaccgccttgctcagcaagcagtacggttcgctggaagcgctg
gtgaaggccagcgagcaccagtggatcgtggcgggcgtaccgcaggccgccgcgtccaat
ctcacggcctacctcgccaatgaaaagaacgcggccgaactggcgcgcactgattgggcg
atgcggacgctgctggaggcgctcccggcgaagtctgcggcggcgctgccgctggaaggg
cacacctacgtgatcaccggcaccatggagacgctgaaacgcgacgatgccaccgagcgt
cttgagtcgctcggcgccaaggtggcgggttcggtatcgaagaagaccacgggcgttttc
gctggcgaggcggcgggctccaaactcgacaaagccaacgaactcggcatcccggtgcat
accgaggccgacctcatcgcgctgctggagacacacggagtcgcgccgtga
DBGET
integrated database retrieval system
