Ligilactobacillus agilis: BEN83_07555
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Entry
BEN83_07555 CDS
T05198
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lagl
Ligilactobacillus agilis
Pathway
lagl03030
DNA replication
lagl03410
Base excision repair
lagl03420
Nucleotide excision repair
lagl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lagl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BEN83_07555 (ligA)
03410 Base excision repair
BEN83_07555 (ligA)
03420 Nucleotide excision repair
BEN83_07555 (ligA)
03430 Mismatch repair
BEN83_07555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lagl03032
]
BEN83_07555 (ligA)
03400 DNA repair and recombination proteins [BR:
lagl03400
]
BEN83_07555 (ligA)
Enzymes [BR:
lagl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BEN83_07555 (ligA)
DNA replication proteins [BR:
lagl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BEN83_07555 (ligA)
DNA repair and recombination proteins [BR:
lagl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BEN83_07555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BEN83_07555 (ligA)
MMR (mismatch excision repair)
DNA ligase
BEN83_07555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BEN83_07555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
LysX_preATP_grasp
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ASR41320
LinkDB
All DBs
Position
complement(1479843..1481867)
Genome browser
AA seq
674 aa
AA seq
DB search
MEEKQAKSRLAALRQQLMTWSQEYYVNDNPSVEDAVYDQTYRELLTLEQQFPNLVTADSP
SQRVGGQVLAGFTKVEHEIPMLSLGDVFSKEELAAFIDRLNEATKAPFAYNCELKIDGLA
ISLTYENGVFVKGSTRGNGIIGEDITANLKTIKAIPLTLKEPVSIEVRGECYMPKDSFLA
LNKEREAQGQAVFANPRNAAAGSLRQLDTKITAKRNLSVFIYYLMEPEKLGVTSQSQALA
KLAELGFKVNPDFRLATDMETINNYIDEFHAKRGELAYEIDGIVIKADDFKVHELVGNTV
KVPRWAIAYKFPPDEKETVIHQIEWTVGRTGVVTPTAVMDPVEIAGTMVARASLHNPDYL
REKDVRLGDTVKLHKAGDIIPEISQVVVAKRPEDSEPYEIPTTCPECGAKLVHLDDEVAL
RCINPKCPALIKESLAHFASRDAMNIDGLGPKIIERLYEAHLISDVADLYKLKLEDLLAL
DKFKEKSATKLLTAIENSRHNSSERLIFGLGIRHVGAKVARLLAERFKSVTALSQAPSEE
IAQIDSLGQVIADSVVTYFERPEVKQLLAELEEVAVNFDFLGQSASEIAQANEDSFFNEK
KVVLTGTLDQLKRSQAKQWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELGIEIMD
EQQFIAQMEAIDGE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaacaagcaaaaagcaggttagcagcattacgacagcaacttatgacttgg
agtcaggaatattatgtcaatgataatcctagtgtggaagatgcggtttatgaccagact
taccgagaattattgacgctagaacaacaatttcctaacttagtaacggctgattctccc
agccaacgggttggggggcaagttttagccggctttaccaaggttgaacatgagattcca
atgttatcattgggagatgttttttcaaaagaagagttagcggcctttatcgaccggttg
aatgaagccactaaggcgccctttgcctacaattgtgaattaaaaatagatgggctagca
atttccttaacctatgaaaatggggtatttgtcaaggggtctacccgtggaaacggaatt
attggcgaagacattaccgctaatttaaagacaattaaagccattccgctaaccttaaag
gaacctgtcagcattgaggtgcggggagaatgttatatgcccaaggattcatttttagcc
ttgaataaggagcgcgaagcccaaggacaagcggtgtttgctaatccccgtaatgcagct
gcgggttcgcttagacagttggataccaaaattactgctaaacgcaacctcagtgtgttt
atctactacctaatggaacctgaaaaattgggggtaaccagtcaaagccaggcactagct
aagctggctgaactcggctttaaggttaacccagacttcaggttggcaactgatatggaa
actatcaataactatattgatgaatttcatgccaaacgcggtgaacttgcttacgaaatt
gatgggattgtcattaaggctgacgattttaaggtacacgaattagtagggaatacggtc
aaggtgccacgttgggctattgcttacaagtttccaccggatgaaaaggaaaccgtgatt
caccaaattgagtggacggttggacggaccggggtggttactccgaccgcggtcatggat
ccagttgaaatcgcaggtacgatggtagcaagagcctcgctgcataacccagactaccta
agagaaaaagatgtccgcttaggtgatacggttaaacttcataaggcaggagacattatc
cctgaaatttcacaggtcgtagttgctaagcgccctgaggattcagagccttatgaaatt
ccaactacttgtccggaatgtggggctaagctagttcaccttgacgatgaagtagcactc
cggtgtattaaccccaagtgtccggccttaatcaaggaaagtctagcccactttgcaagc
cgtgatgccatgaatattgatgggctgggacctaaaattatcgagcgattgtatgaggcc
cacttaattagcgatgttgctgatttatataaacttaagttggaggacctattagcttta
gataagtttaaggaaaaatcagctactaagctattgacagccattgaaaatagtcggcat
aattctagtgaacgtctaatttttggcttgggaattcgccatgtcggtgccaaggtagcc
cggctgttagctgaacgttttaagagtgtgacggcgttaagtcaggctccaagtgaagag
attgctcaaattgacagtttagggcaagtaattgctgatagtgtggtaacgtattttgaa
cggccagaggtcaagcaattattggctgaacttgaagaggttgcagtcaacttcgacttt
ttaggtcaaagtgcaagtgagattgcccaggctaacgaagacagcttctttaacgaaaag
aaggtagtcttaacgggaacattggaccagttaaagcggtcgcaggccaagcaatggtta
gaagctcatggtgccaaggtgacgggctctgtttctaagaagacggaccttctgattgct
ggtcatgacgcgggtagtaagttgaccaaagcccaagaattaggcattgaaattatggat
gaacaacaattcattgcacaaatggaggcaattgatggtgaataa
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integrated database retrieval system
