Limosilactobacillus allomucosae: ABC765_09440
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Entry
ABC765_09440 CDS
T10728
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lalo Limosilactobacillus allomucosae
Pathway
lalo03030
DNA replication
lalo03410
Base excision repair
lalo03420
Nucleotide excision repair
lalo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lalo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABC765_09440 (ligA)
03410 Base excision repair
ABC765_09440 (ligA)
03420 Nucleotide excision repair
ABC765_09440 (ligA)
03430 Mismatch repair
ABC765_09440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lalo03032
]
ABC765_09440 (ligA)
03400 DNA repair and recombination proteins [BR:
lalo03400
]
ABC765_09440 (ligA)
Enzymes [BR:
lalo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABC765_09440 (ligA)
DNA replication proteins [BR:
lalo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABC765_09440 (ligA)
DNA repair and recombination proteins [BR:
lalo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABC765_09440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABC765_09440 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABC765_09440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABC765_09440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Nlig-Ia
Hydrolase_6
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XBG95260
UniProt:
A0AAU7C2T2
LinkDB
All DBs
Position
complement(2027049..2029094)
Genome browser
AA seq
681 aa
AA seq
DB search
MTEQKSVNDLTLKEATAEIGPLKAQLLQWGKEYYEQDAPTVEDYVYDRNYQRLVDIENRF
PELITPDSPTQKVGGAAETVLTKVEHAIPMLSMGDVFSVAELMDFNARQQDNPNFTGTTE
YNLELKIDGLSLSLVYENGRLVQGSTRGNGMIGEDVTENVKTIKSIPQKLAEPLSLEFRG
ECFMPKAAFAKLNEEREANGLPTFANPRNAAAGSLRQLDAKVTAKRELDTFMYYIPEYEK
LGVKTQAQALDKMRQLGFHVNEFNRVVHNEAEIKAYIDEYTAKRDDLPYGIDGIVEKVND
LAVEEALGATVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQLAGTTV
SRASLHNPDYLKDKDIRLGDTVLLHKAGDIIPEISRVILNKRPVDSQPYEIPTLCPVCQS
KLVHLDDEVALRCINPMCPAQVKEGLVHFASRNAMNIDHLGPRVIEQLWDRHLVHDVADL
YRLTYDQLLTLDKFGPKSANNLLTSIANSRNNSVERLLFGLGIRHVGAKAARILAQHFGS
LAAIIAADEESIAEINTIGPTIADSLKNYFANEQVQELIQELQAAGVNLEYRGPAPIAQD
SAAAKEWQGKRVVLTGKLNEMTRDQAKQWLEERGASVTGSVSKKTDLVIAGEKAGSKLTK
AQDLGVEVWNESRFAQAMKED
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaaaatcagtcaatgacttaacgctcaaggaagccacggcagaaatcggt
ccgttgaaagcccagctgctgcaatggggcaaggaatactatgaacaggatgcgccgacc
gttgaggactatgtttatgaccgtaattatcagcggctggttgacattgagaatcgtttc
cccgaactgatcacacctgattcaccaacgcaaaaagtcgggggtgcggctgaaaccgtc
ttaacaaaagtcgaacatgccattccaatgctttcgatgggggatgtcttttcggtcgcc
gaattaatggactttaatgctcgccagcaggataaccccaattttaccgggacgacagaa
tataatctggaactaaagattgacggcctttccttatcgctggtttatgaaaatggtcgt
ctcgtgcagggttcaacacggggtaacgggatgatcggcgaggacgtcactgaaaacgtc
aaaaccatcaaatcgattccgcaaaagcttgctgagcctttgtcactggaatttcgcggt
gagtgcttcatgccaaaagccgcatttgccaaattaaacgaggaacgcgaagccaatgga
ctgccaacgtttgccaacccaagaaacgcagcggctggcagtctgcggcagctggatgcc
aaagttaccgccaaacgagaattggatactttcatgtactacattcccgaatatgaaaaa
ctgggcgtcaagactcaggcccaggctttagataagatgcggcaattaggatttcacgtc
aatgaattcaatcgcgtcgtgcataatgaagcggaaatcaaggcctatatcgatgaatac
acggccaagcgcgatgatctgccatatggaattgacggtatcgtcgaaaaggtgaatgat
ctggctgttgaagaggcactgggcgcgacggttaaagtaccgcgctgggagattgcctat
aagttcccacctgaagagcaggctaccgtagtcagagatattgaatggacggttggtcga
actggcaacgtcacgccgactgcagtgatggatccggttcagctggctgggacgacggtt
agccgggcttctctgcataatcccgactatctaaaagacaaggacattcgcctgggtgat
acggttctattgcataaggccggtgatatcatccctgagatctcacgcgttatcttaaat
aaacgtccggttgacagtcagccatatgagattccaacgctttgtccggtctgtcagtcc
aagctggttcacctggatgatgaggtagcgctgcgctgcatcaatccaatgtgtccggca
caggtaaaagaaggtctggttcatttcgcttcacgcaatgccatgaacatcgaccatctg
ggaccaagagtaattgagcagctctgggatcgtcatttggttcatgatgttgccgatctg
tatcgcttaacctatgaccaattattaacattagataaatttgggcccaaatcggctaac
aacctattgacatcgattgccaatagtcgcaataattctgttgagcgtctattgtttggc
ttgggcattcgtcatgtcggtgccaaggcggctcgcatcttagctcagcattttggctct
ctggcggcaataatagcagctgatgaggaatcgattgccgagatcaacacgattgggcca
acgattgccgatagtctgaaaaactattttgccaacgagcaggtgcaggaattgattcaa
gagctgcaggcggccggcgtcaatctggaataccgtggaccagcaccgatcgctcaagac
agtgcggccgctaaagaatggcaaggcaagcgcgtggtcttgacgggtaagctcaatgaa
atgacgcgcgatcaagccaagcaatggttggaagaacgcggtgccagcgtaaccggcagc
gtgtcgaaaaaaacagatttggtcatcgctggagaaaaggctggctccaagcttaccaag
gcccaggatctgggagtcgaggtctggaatgaaagccggtttgctcaagcgatgaaggag
gattaa
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