Companilactobacillus allii: BTM29_05945
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Entry
BTM29_05945 CDS
T05413
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03030
DNA replication
lalw03410
Base excision repair
lalw03420
Nucleotide excision repair
lalw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTM29_05945 (ligA)
03410 Base excision repair
BTM29_05945 (ligA)
03420 Nucleotide excision repair
BTM29_05945 (ligA)
03430 Mismatch repair
BTM29_05945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lalw03032
]
BTM29_05945 (ligA)
03400 DNA repair and recombination proteins [BR:
lalw03400
]
BTM29_05945 (ligA)
Enzymes [BR:
lalw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTM29_05945 (ligA)
DNA replication proteins [BR:
lalw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTM29_05945 (ligA)
DNA repair and recombination proteins [BR:
lalw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTM29_05945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTM29_05945 (ligA)
MMR (mismatch excision repair)
DNA ligase
BTM29_05945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTM29_05945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Mer2
Motif
Other DBs
NCBI-ProteinID:
APX72128
UniProt:
A0A1P8Q2P4
LinkDB
All DBs
Position
1222031..1224049
Genome browser
AA seq
672 aa
AA seq
DB search
MAEITKSQANEELASLRNQLNEYRDAYYTKDAPLVEDNVYDQQYNRLLELEQQFPELIMP
DSPSQLVGDVTLPDFNKVTHDIPMLSMGDVFSEEELAEYNGRIEKSVGEEIDYNVELKID
GLAISLVYENGILVQGSTRGNGTIGENVTENLKTIETIPQKLSEPLTFEVRGECFMSKKE
FLRLNEEREKEGLQVFANPRNAAAGSLRQLDPKVTASRKLDTFMYTIVTFDNLNITTQSQ
ALKKLSELGFHVNPSAEVTKGLNGVKEYIERYGKIRDDLDYGIDGVVLKVNDLATQRGLG
NTVKVPRWEIAYKFPPEQAESIVREITWTIGRTGVLTPTAVMDPVQLAGTTVARATLHNE
DMIKQKDIRVGDTVMLHKAGDIIPEVSQVVLSKRPKDSVEALIPTNCPYCDSKLIHLEDE
VALRCINPKCPAQVKEQLTHFASRNAMNIDGLGPKIIEQLYTKSLIKDVADLYKLTANDL
ATLDGFKEKSINNLLSAIDNSKANSVERLIFGLGIRHVGAKAGRILAENFLNLDNLMNAT
KEEILEVNTMGGIIADSIIMYFANDDVKKLINELKLVNLNMEFIGSSNSNETNQHFTDKI
VVITGTLQNYKRSELSDLLESLGAKVTGSVTKKTDILIAGEKSGSKLTKAQQLGTQIIDE
ATLSDYLDNAED
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatcacaaaatcacaagctaatgaagaactagcatctctaagaaatcagtta
aatgaatatcgagatgcgtattatactaaggatgctccattagttgaagataatgtttat
gatcaacaatataaccgcttattagaactagaacagcaatttcctgaattgataatgccg
gactctccatcccaattagttggagatgtaactttaccagactttaataaggtgacacat
gatattcctatgctttctatgggggatgttttctctgaagaagagctagctgaatataat
ggaagaattgaaaaaagtgtcggcgaagaaattgattataatgttgaattaaaaattgat
ggattggctatttcactggtttatgaaaacggaatactagtgcagggttcaacgcgtggt
aatggaacgattggtgaaaatgttactgagaatttgaagacgattgaaacgattccacag
aagttaagtgaaccactgacttttgaggttcgtggtgagtgtttcatgtccaaaaaagag
tttttacgtttgaatgaagaacgagaaaaagaaggattacaggtctttgctaatccgaga
aatgctgctgctggaagtcttcgtcaactggatccaaaagtgactgcttcaagaaaacta
gatacattcatgtatactatagtaacttttgataatttgaatataactactcaaagtcag
gctctaaaaaaactcagtgaattaggctttcacgtaaatccaagtgctgaagtcacaaag
ggattgaatggtgtcaaagagtacattgaacgctacggtaaaattcgtgatgacttagat
tatgggatcgatggtgtcgtccttaaagtaaatgacttggcgactcaacgtggactgggt
aataccgtcaaggttcctcgttgggaaattgcctacaagttcccgccagaacaagctgaa
tcaatcgttagagaaataacgtggactattggtaggactggtgttttgacacctactgct
gtcatggatccagtgcaacttgctggtacgacagttgctagagccacactccacaatgaa
gatatgattaagcaaaaggatatccgagtgggagatactgtgatgttacacaaagcagga
gatattatcccagaagtttcacaggttgttttaagtaaacgtccaaaagattctgtggaa
gcactgattcctactaactgtccatattgtgattcaaagttgatacatttggaagacgaa
gtggcactacgttgtatcaatccaaagtgtccagctcaagtaaaagaacaattgacacat
tttgcttcacgaaatgcgatgaatattgatggtttaggtcccaaaatcatagaacagttg
tatactaaaagcttgattaaagatgttgctgatttatataaattgacagccaatgattta
gcaacattggatggttttaaagagaagtccatcaataatctgttgagtgccattgataat
tccaaggcaaactctgtcgagagattaatatttggtttaggaattcgtcatgttggtgca
aaagctggtagaattcttgctgagaactttttgaacttagataatttaatgaatgcaact
aaagaagagattctagaggttaatactatgggcggaattattgctgatagtattatcatg
tattttgcaaatgatgatgttaaaaaactgatcaatgagttgaaattagttaatctcaat
atggaatttattggtagttccaattctaatgaaacaaatcagcattttactgataaaata
gttgttataaccggaacattacagaattataaacgctcagaattatctgacttattagaa
agtttgggtgccaaggttacaggttcagtcacaaagaaaactgatatcttaattgctggt
gagaaatctggtagtaagttgactaaggcccaacaattaggaacgcagattattgatgaa
gcaacattatctgattatttggataatgcggaggattag
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