Lactobacillus amylovorus GRL 1112: LA2_02855
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Entry
LA2_02855 CDS
T01371
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lam
Lactobacillus amylovorus GRL 1112
Pathway
lam03030
DNA replication
lam03410
Base excision repair
lam03420
Nucleotide excision repair
lam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA2_02855
03410 Base excision repair
LA2_02855
03420 Nucleotide excision repair
LA2_02855
03430 Mismatch repair
LA2_02855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lam03032
]
LA2_02855
03400 DNA repair and recombination proteins [BR:
lam03400
]
LA2_02855
Enzymes [BR:
lam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LA2_02855
DNA replication proteins [BR:
lam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LA2_02855
DNA repair and recombination proteins [BR:
lam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LA2_02855
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA2_02855
MMR (mismatch excision repair)
DNA ligase
LA2_02855
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA2_02855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
Zn_ribbon_NUD
DUF4796_N
bCoV_SUD_C
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ADQ58551
UniProt:
E4SM95
LinkDB
All DBs
Position
574033..576036
Genome browser
AA seq
667 aa
AA seq
DB search
MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP
DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVGHPVEYNVELKID
GLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPLTTEVRGECYMGKEA
FAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGITSQHQA
IERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKIDDLNIEQELGN
TVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKIPDTCPSCGQKLVHLEDEV
ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTADDLA
ELDHFKEKSINNLLTAIDNSKSNSVELLITGLGIDHVGAKAARLIAQKFKNLSKIMAQGV
QDIASIDTIGMTIAESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTV
VLTGKLEHYTRSEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEE
EAIAQIE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattactcttgatgaagccaaaaaagaggctgcttcacttagaacccaattg
aatgaatgggccgatgcatactactcaaaagatgcacctgaagttgaagataatgtctat
gatcaaagctataatcgtttgcttgaactcgaaaaagagttcccagagatagtcacaccc
gattcaattacgcaaagagttggtggacaaattgacaacgattttactaaagttgagcac
ccgattcctatgctttcaatgggggatgtcttttcaaaagaagaattgaaagaatttgac
caacggatgcaaaaattggttggccaccccgttgaatacaacgtcgaattaaagatcgat
ggtttgtcattatcgcttgaatatgaaaacggtaagttggttcgtgcttcgactcgtggt
aacggttatgtaggtgaagatgtaacggctaacgcgcattacattgccgacattccgcaa
actttgccagagcctttgactacggaagtgcgtggcgaatgttacatgggcaaggaagcc
tttgccaagcttaacgaagagcgtgaagaacaaggtttgagcgtttttgccaatccacgt
aacgccgcagccggttcgcttcgtcagcttgaccctaaggtaacgaagaagcgtcaactg
agcacctttatctatacttgggttaatccaccagaaggtattactagccagcaccaagcc
attgagcgtatgcacgaattaggttttcacactaatgaaaccggtcgtaaattagctacg
cttgatgagatctttgactttattgatgaatatacggctaagcgtaacagtttgacctat
gtcatcgatgggatcgtattgaagattgatgatttaaacattgaacaagaattgggtaat
accgtaaaagtgccacgttgggaaattgcttataagttcccaccagaagaacaagagaca
attgtccgcgacatcgtttggacggttggccgtaccggtgtcgtaacgccaactgctgtg
atggatcccgttcaacttgctggtacaactgttgctagagcttcgctgcacaaccctgac
tatttaaatgaaaagggcgttcgcattggcgatacggttaaattgcacaaggccggcgac
atcattccagaaatttctgaagttgttttagcaaagcgtccagcagattcagagccttac
aagattcctgatacttgtccatcatgtggtcaaaaactggttcacttagaagacgaagta
gctcttcgctgcattaacccatcttgtccagcccaagtagaagaaggaattacccacttt
gcatcgcgtcctgcgatgaatattgccggcttaggtcctaagatcgttaagcagttaatt
gccaaggatttggtgcacaacgttgccgatctttaccacttaactgccgatgatttggcc
gagcttgatcactttaaggaaaaatcgatcaataatttgcttactgcaattgataattcc
aagtcaaattcagtagaattgttaattacaggccttggaattgatcacgttggagcaaaa
gcagcccgtttaatcgcccaaaaatttaaaaatctgtcaaagattatggctcaaggggtg
caagatattgcttcaatagatacaataggcatgacgattgccgaatcgatgactacgtat
tttgctcagcctgaagtacaaaagctgattgaagaattgcgcgaaagtggtttgaacatg
gattacctcggtgaagatgaagaagctgcacctgataacccattcaaagataaaacggtt
gtattaactggaaaattagagcattatacaagaagtgaatttaccaagaagttgcaagcc
ttaggtgctaaggttaccggctcagtttctaagaagaccaattatgtaatttatggtaag
gatgccggatctaagtacaataaggccgagcaactgggaattccgcttttaaccgaagaa
gaagcaatcgcacaaattgaataa
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