Lactobacillus amylolyticus: B1745_01170
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Entry
B1745_01170 CDS
T05057
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lamy
Lactobacillus amylolyticus
Pathway
lamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1745_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lamy03019
]
B1745_01170
03009 Ribosome biogenesis [BR:
lamy03009
]
B1745_01170
Enzymes [BR:
lamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B1745_01170
Messenger RNA biogenesis [BR:
lamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1745_01170
Ribosome biogenesis [BR:
lamy03009
]
Prokaryotic type
rRNA helicases
B1745_01170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARD06337
LinkDB
All DBs
Position
234633..236114
Genome browser
AA seq
493 aa
AA seq
DB search
MKFSELGLNEDLLKAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPIL
QNLDKHEKTIQAVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLKHHV
PAILVGTPGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQTLL
FSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEISYMQTIEQLTK
KKMSPLRPPTDDQALHGQLKQAKSEIEDLMNGDLSKYEDDANELLENYSALDLVAAFLKN
LSKDSTDVKVKITPEKPLPYKGDGRHRRGHHGRSGNYGQRRNNNNYRGRRHTDGGHRNRR
NYGHDFVIKNKKD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcggaattaggcttaaatgaggatttgctcaaagcaattaaaagatcaggt
tttgaagaagcaacgccgattcaagcagaaactattcctcttgctttagcaggcaaggat
gttattggacaggctcaaacaggtacaggtaagacagctgcttttggcttaccaattttg
caaaatttggataagcatgaaaaaactatccaggctgtgattattgagccaacgcgtgaa
ttagccatccaaactcaagaagaattattccgtcttggtcgtgatgaacatgcacgcgtt
caagtagtttatggtggggctgatattggtcgccaaattagatcattaaagcatcatgtg
ccagctattttggttgggacacctggtcgacttcttgaccacttaaaacgcgggacgatt
gatttaagcaagaccaagaccgtcgttttggatgaagccgatgaaatgcttgatatgggt
ttcattcaagatattgaaagtattttgaaatatgtaggcgagcgtaagcagacattattg
ttcagtgccacaatgccaaagccaattttgcaaattggcgaaaagtttatgcatgatcct
gaggtcgttaagatcaaagccaaagaattgactgctgatttaatcgatcaatactttgtt
cgggcaaaagaatcagaaaaattcgacattatgtgtcgtttaattgatgttcaaggtcca
gatctcgctttggtctttggtcgaactaaacgccgtgttgatgaattaacccgtggtttg
caagctcgtggctataatgctgcaggaattcatggcgatttgtcacaagcacggagaatg
agtgttttgaaacagttccgtgccggcaaattggacattttggtagcaaccgatgtagct
gctcgtggacttgatatttcaggagttacgcacgtttataactatgatattcctcaagat
ccagactcctatgttcaccggattggacgtactggtcgtgctggtcagaatggaatttct
gttacttttgtcactccgaatgaaattagctacatgcagaccattgagcaattaactaaa
aagaaaatgtcaccacttcgtccgccaacagatgatcaggctttgcatggtcaattaaag
caggctaagtctgaaattgaagacttgatgaatggtgacttgagcaagtacgaagatgat
gcgaacgaattgcttgaaaattattccgcattagacttggttgctgcctttttgaagaat
ctttctaaggactcaactgatgttaaagttaagatcacgcctgaaaagcctttgccatat
aaaggtgatggtcgccaccgtcgcggtcaccatggccgtagtggcaattatggtcaacgg
cgcaataacaacaactatcgtggccgtcgtcatactgatggtggtcaccgtaatcgcaga
aattatggacatgattttgtcattaagaataagaaagattaa
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