Ligilactobacillus animalis: FAX13_07445
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Entry
FAX13_07445 CDS
T06852
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lani
Ligilactobacillus animalis
Pathway
lani03030
DNA replication
lani03410
Base excision repair
lani03420
Nucleotide excision repair
lani03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAX13_07445 (ligA)
03410 Base excision repair
FAX13_07445 (ligA)
03420 Nucleotide excision repair
FAX13_07445 (ligA)
03430 Mismatch repair
FAX13_07445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lani03032
]
FAX13_07445 (ligA)
03400 DNA repair and recombination proteins [BR:
lani03400
]
FAX13_07445 (ligA)
Enzymes [BR:
lani01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAX13_07445 (ligA)
DNA replication proteins [BR:
lani03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAX13_07445 (ligA)
DNA repair and recombination proteins [BR:
lani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAX13_07445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAX13_07445 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAX13_07445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAX13_07445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
BRCT_2
HHH
LysX_preATP_grasp
HMBD
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QCQ04453
LinkDB
All DBs
Position
complement(1550353..1552365)
Genome browser
AA seq
670 aa
AA seq
DB search
MEAKTLEEVKDLRAQLNKWSHEYYVLDRPTVEDHVYDATYQRLVELETKYPELVTDDSPT
RRVGGQILSGFEKVEHEIPMLSLGDVFSKAELAEFKTKLEENVATTFAYSCELKIDGLAI
SLVYEKGVFVKGSTRGNGIIGEDITENLKTIKAIPLRLSEPIDVEVRGECYMPKESFLKL
NKAREEQGQTVFANPRNAAAGSLRQLDTKETAKRNLSVFMYYLMEPERFGVTTQSQALAQ
LKAWGFKVNEEAIVASEMAEIDAYIDEYQAKRAQLAYEIDGIVIKADPFAIHAEVGNTVK
VPRWAIAYKFPPDEQETIVREIEWTVGRTGVVTPTAVMDPVTLAGTVVSRASLHNPDYLQ
QKDIRLGDTVKLHKAGDIIPEISEVVLAKRPASSEPYAIPTKCPECGAKLVHLDDEVALR
CINPQCPALLKESLTHFASRNAMNIDGLGPRIIEQLFDKKLIKDAAGLYNLTFDELLTLD
KFKEKSANNLLQAIEQSKANSLERLLFGLGIRHVGAKAAFILAQHFKTIQALKKATVEEI
VELDSIGETIADAVVTYFENEQVDLLLEEFAAAGVNLTFLGQSAEELAEQTADDPLNGLT
VVLTGKLDKIKRAEAKKILEAHGAKVTGSVSKKTDLLVAGHDAGSKLTKAQELGIKIIDE
DEFLRQTGGN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaagactttagaagaggtcaaagatctacgtgctcaattgaacaaatggagc
catgaatactatgtgttggatcgaccaacagtggaagatcatgtctatgacgctacctat
caacgtttggtcgaacttgaaactaagtatcctgagctcgtaactgatgattcacctact
agacgtgtcggcggtcaaattttaagtggctttgaaaaggtcgaacacgagatcccaatg
ctttcgctaggcgatgttttttcaaaagcagaactagccgaattcaaaaccaaactagag
gaaaatgtagccacgacttttgcttatagctgtgaattaaagatcgatggcttagcgatc
tcgttggtctacgaaaaaggtgtctttgtcaaaggttcgacccgtggcaatgggatcatc
ggtgaagatatcacggaaaacttaaaaacgatcaaggcgatccctttgcgtttaagtgaa
ccgatcgacgttgaagtccggggcgaatgctatatgccaaaagagtcattcctaaaattg
aataaagcgcgcgaagaacagggccaaacagtctttgctaacccaagaaatgctgcagct
ggttcgttgcggcaattagataccaaagaaacagccaagcgtaatttaagtgtctttatg
tattatttgatggagcccgaaagatttggggtcacgacccaaagtcaggctttagctcaa
ttaaaagcatggggcttcaaagtcaatgaagaagcgatcgtagcaagtgaaatggctgag
atcgatgcctatattgatgaatatcaggctaaacgggcacaactagcgtatgagatcgat
gggatcgttatcaaagctgatccgtttgcgatccacgccgaagttggaaatacggtcaaa
gttccacgttgggcgatcgcttataaattcccaccagacgaacaagaaacgatcgtccgt
gagatcgaatggacggtgggccggactggagttgtgacaccaacggcagtgatggatcca
gtgactttagccgggaccgtggtttcaagggcttctttacacaatcctgattatttacaa
caaaaagatatccgtctcggtgatactgtcaaattacacaaagcaggtgacattattcca
gagatctcagaagttgtgttggctaaacgcccagcttcaagcgaaccttatgcgatccca
acaaaatgtcctgaatgtggcgcaaaactggttcatttggatgacgaagttgcgttgcgg
tgtatcaatccgcagtgtccagccttattaaaagaaagtctgactcactttgcgtcgcga
aatgcgatgaacatcgatgggttagggccacggatcatcgaacaactcttcgacaagaaa
ttgatcaaagatgcggcggggctatataatttgacctttgatgaattattgacactggat
aaattcaaagaaaaatcagccaataatctattgcaggcgatcgaacagagcaaagctaac
tcattagaacggttactttttggcttggggatccgacatgtgggggctaaagcggcattt
atcttagcccaacactttaagacgatccaagctttaaagaaagcaacggtagaagagatc
gtagaacttgactcgatcggtgaaacgatcgcggatgctgtggtgacatattttgaaaac
gaacaagttgatctattattggaagaatttgctgcagctggagttaatttgactttccta
ggtcagagcgctgaagagctagccgagcaaacagccgatgatccattaaatggtctgacc
gtagttttaacgggaaaactcgacaagatcaagcgagcagaagctaaaaagatcttagag
gcgcatggtgctaaagtaacggggagcgtttcgaaaaagaccgaccttttagttgcaggt
catgatgctggtagcaaattgactaaggcccaagaattaggaataaaaattattgatgaa
gatgaatttttacggcaaacaggaggcaattga
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integrated database retrieval system
