Legionella antarctica: TUM19329_24790
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Entry
TUM19329_24790 CDS
T07713
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lant
Legionella antarctica
Pathway
lant03030
DNA replication
lant03410
Base excision repair
lant03420
Nucleotide excision repair
lant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM19329_24790 (ligA)
03410 Base excision repair
TUM19329_24790 (ligA)
03420 Nucleotide excision repair
TUM19329_24790 (ligA)
03430 Mismatch repair
TUM19329_24790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lant03032
]
TUM19329_24790 (ligA)
03400 DNA repair and recombination proteins [BR:
lant03400
]
TUM19329_24790 (ligA)
Enzymes [BR:
lant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TUM19329_24790 (ligA)
DNA replication proteins [BR:
lant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM19329_24790 (ligA)
DNA repair and recombination proteins [BR:
lant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TUM19329_24790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM19329_24790 (ligA)
MMR (mismatch excision repair)
DNA ligase
TUM19329_24790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM19329_24790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCA96118
UniProt:
A0A6F8T6T1
LinkDB
All DBs
Position
complement(2579346..2581367)
Genome browser
AA seq
673 aa
AA seq
DB search
MGDIEIKGLIAALKEQIRDYDYHYYALDEPLIPDAEYDRCFRALQKLEAEYPQFLTADSP
TQRVSGTPLEAFMPVAHKQPMLSLSNVFSTEELQSFIKRATDKLDEPNQQLIFTCEPKLD
GLAVNLTYELGILTHAATRGDGTVGENITANIKTITAVPLKLRTQNPPQFIEVRGEVYIP
KAGFEAYNRKARASGEKTFANPRNAAAGSLRQLNPAITANRPLAIYCYGIGACEGYRLPA
SHLLQLQLLKDFGFRVSSETRKESGIEGCLSYYHAMLVKRDKLPFEIDGVVYKIDSIPLQ
QQLGYVSRAPRFACAHKFPASEEMTRLIAVDFQVGRTGALTPVARLEPVSVGGVTVSNAT
LHNLDEIARKDIRIGDTVIIRRAGDVIPEVVSVVLVNRPSDTEMIHLPEQCPICGSEVIR
EEGEAVARCIGGLFCKAQLKRMMWHFASRKAMDVDGLGSVLIEQLVDEGIVHRLSDLYEL
DLPTLANLPRMGERSAQNLLSSLEQSKKTTFNRFLYALGIREIGESSARVLAEHFSDIDA
IQSATVDELMSLNDIGPVGAAYVVHFFAQPHNLEVIQRLLELGIHWPKTEKKVINQEHPL
FGRTVVLTGTLNTMGREDAKAKLLALGAKVSGSVSAKTDFLIAGSEAGSKLVKATELGVA
VLEEEQLLKMLSL
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatatcgagataaagggactgatcgcggcacttaaagagcaaataagagattat
gattatcattattatgcactggatgaacccctgatacccgatgcggagtacgatcgttgt
ttccgagccttacaaaaattagaagctgaatatccgcaatttttaacagcagattcacca
acacaaagagttagtggcacccccctggaagcctttatgcctgtcgctcacaaacagcct
atgttatcgctctctaatgtcttttcaaccgaggaattacagtcatttattaaacgtgcg
accgataaattggatgagcctaatcagcagctaatttttacctgtgaacccaaacttgat
ggtttggcagtaaatcttacttatgaattgggtatattaactcatgctgcaacccgggga
gatggaaccgttggcgaaaacattactgcaaatattaagaccattacagcagttccctta
aaattaagaactcaaaatccacctcaatttatagaagtgcgcggggaagtttatattcct
aaagcggggttcgaagcttataatcggaaagcaagagcgtcgggagaaaaaacttttgca
aatccgcgtaatgcagcagcaggtagtttaagacaattaaatccggccattactgctaac
agacccttggctatatattgttatgggattggcgcttgcgaagggtaccgattacctgcc
agtcatttattgcaactgcaattgcttaaagattttggttttagagtgtcttctgaaacc
agaaaggaatctggaatagagggctgtttgagttattatcatgccatgctggtcaaacga
gataagttaccttttgaaattgatggtgtggtttataaaattgacagtattcctttgcag
caacaattaggctatgtgtcgcgtgcccctcgttttgcctgtgctcataagttccctgcc
tcagaagaaatgactcgattaatagctgttgattttcaagtaggaagaaccggagcattg
actcctgtggctcgcctggaacctgtaagtgtaggtggtgtaaccgtaagcaatgctacc
ttgcataatcttgatgaaattgcccgtaaagatatacgcattggcgacacggtgattatt
cgtcgggctggggatgtgattcctgaggtagtctccgtggtgttggtcaatcgtccatcc
gatactgaaatgattcatcttcctgaacaatgtccaatatgtggatctgaggtcatccgc
gaggaaggagaagctgttgcacgatgtatcgggggtctattttgcaaagctcagttaaaa
agaatgatgtggcattttgcatcccgcaaggctatggatgtagacggtttaggctctgtg
ctcatagagcagttagtcgatgagggtatagtgcatcgtttatctgatctgtatgagctt
gatttgcctactttggccaatctacccagaatgggagagaggtcagcacaaaatctattg
tcgtctttagaacagagtaagaaaaccacgtttaaccggtttctttatgcattagggatt
agggaaattggtgagtccagtgctcgcgttttagcagaacatttctcagatattgatgct
attcagtctgctactgtggatgagctgatgagcttaaatgacataggaccggtaggtgct
gcctatgtggtacatttttttgctcaaccccacaatcttgaggtgattcaacgtttgtta
gagttgggtatccattggcctaaaacagaaaaaaaagtaatcaatcaagagcatccttta
tttgggaggacagtggtattaaccggtaccctgaatactatggggcgtgaagatgcaaaa
gcaaaactattggccttaggtgctaaagtaagcggtagtgtatctgcaaaaacagatttc
ctaattgccggaagcgaagctgggtccaagttggtaaaggcaacagaactaggtgttgct
gttctggaagaggaacagttgctaaagatgctgtccctttga
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