Candidatus Liberibacter americanus: lam_790
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Entry
lam_790 CDS
T02902
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03030
DNA replication
lar03410
Base excision repair
lar03420
Nucleotide excision repair
lar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lam_790 (lig)
03410 Base excision repair
lam_790 (lig)
03420 Nucleotide excision repair
lam_790 (lig)
03430 Mismatch repair
lam_790 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lar03032
]
lam_790 (lig)
03400 DNA repair and recombination proteins [BR:
lar03400
]
lam_790 (lig)
Enzymes [BR:
lar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lam_790 (lig)
DNA replication proteins [BR:
lar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lam_790 (lig)
DNA repair and recombination proteins [BR:
lar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lam_790 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lam_790 (lig)
MMR (mismatch excision repair)
DNA ligase
lam_790 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lam_790 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHA28133
UniProt:
U6B5N4
LinkDB
All DBs
Position
complement(898502..900676)
Genome browser
AA seq
724 aa
AA seq
DB search
MSIKEIIPLESLTFEQARNDFLFLASEISYHNDLYYDKSKPIISDAKYDQLYQRYESIAQ
YFPSLAELKPANKHLIAVGQEKNLKFFKVEHSVPMLSLKKSYSEKDLKNFFSSVYRRLKI
KVKNSIPFILEPKIDGVSISIRYENGKFIHAGLRGDGFSGENVSRNIRTIHMIPQVLSSK
VPKVLEVRGEIYISKSDFLVINEKRIESGKSAYSTPRNAVSGLIRFFDYNFVATHNIKFL
VHGIGSVSEKFAESQSEMFEKISNLGFPVNDRNKICYIFNDILSYYHEIEKIRSSLEYDI
DGVVYKVDKFDFQEKLGFSSISPNWAISHKFNANKGITRLLDIDIQIGRTGTLTPVARLE
PINIGGVLICNATLHNEDYIRGCDSSGKIIREGRDIRIGDMVVVKRAGDVIPQVIDVLIE
HRTTDTAVFSFPSVCPVCKSDAIRCFNSKTGKVDSVRRCTGDYICPAQQLEHLKYFVSRN
AFNIEGLGDKQLDFFFKSNDYSLSIKIPADIFTLQYRQANSNLNLENIPGFAKLSVSNLY
ESINKRREISLDRFIFSLGIRNVGKHISKSLAKYYLSYDNFINDISNIINKINGSDVLLK
KIPFIGDVIVESIVEFYKNDGNNRAIASLLQEVKIKPIMDQNISKSSSRLEGKRLVFTGT
LNNINRDKAQELVEKLGAKVSNSVSSKTDIVIVGSNAGTKVNKADKLGIEIMYENDFLSL
IKYV
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtctattaaggaaattattcctctcgaaagtttaacttttgagcaggctagaaatgat
tttttatttctagcaagtgaaatatcttatcataatgatctttattatgataaatcaaaa
cctataatttctgatgctaaatatgatcaattgtatcaacgttatgaatctatagcgcaa
tattttccatctttagccgagcttaaacctgcaaataagcatttaatcgcagtaggacaa
gaaaaaaatcttaagttttttaaggttgaacattctgttccgatgttatcactaaaaaag
tcttattcagaaaaagatcttaaaaactttttttctagtgtttataggcgattaaaaata
aaagttaaaaatagtattccttttattcttgagccaaaaatagatggtgtatctatttca
attaggtatgagaatggaaaatttattcatgctggacttcgtggagatggttttagtgga
gaaaatgtcagtcgcaatatacgaactattcatatgatcccacaggtattatcatcaaaa
gtaccaaaagttttagaagttcgtggtgagatttacatctcaaaaagtgattttttagtt
attaatgagaaaagaattgaatcagggaaaagtgcttattctactcctagaaatgctgtt
tctggattaatacgattttttgactataattttgtagcaactcataatattaaattttta
gttcatggaataggaagtgtctctgaaaagtttgctgaatcccaatcagaaatgttcgaa
aaaattagtaatttaggatttccagtaaatgacagaaacaaaatatgttatatatttaat
gatattttatcttattaccatgaaattgaaaaaatacgttctagcttagaatatgatatt
gatggagtagtgtataaagttgataaatttgattttcaggaaaagttaggttttagttct
attagtccaaattgggctatatctcataaatttaacgctaataagggtattactcgtctt
ttagatattgatattcagattggtcgcacaggaaccctcactccggtggctcgtcttgag
ccaattaatataggtggagtgcttatttgtaatgcaacattacataacgaagattatatt
agaggatgtgattcttctggtaaaataattcgtgaaggtagagatattaggataggggat
atggttgtcgtaaagcgtgcaggcgatgttattcctcaggttatagatgtattaattgaa
catcgtacaactgatacagcggttttttctttcccttctgtttgtcctgtttgtaaaagt
gatgcaatccgttgcttcaattctaaaacaggcaaagttgattctgttagacgttgtaca
ggagattatatatgtccagcccaacaattagagcatttaaaatattttgtatcacgtaat
gcttttaacatagaaggtctaggagataaacaacttgattttttctttaaatcaaatgac
tattccctttcaattaaaattcctgcagatatttttactctgcaatatcgtcaggcaaat
tcgaatttaaatcttgagaatattcctggttttgcaaaattaagtgtttctaatttatac
gaatctattaataagaggcgtgaaatttctttagatagatttatattttcattaggcatt
cgcaatgttggaaagcatatatctaaatctttagcaaaatactatctttcctatgataat
tttataaatgatataagcaatattattaataaaataaatggtagtgatgttttattaaaa
aaaataccttttattggagatgtaatagtagaatctattgtagagttttataaaaatgat
ggtaataatcgtgctatagcttctcttttgcaggaagtaaaaataaagccaatcatggat
caaaatatatctaaatctagttcacgtctagaaggcaagaggttggtatttacaggaact
cttaataatattaatcgtgataaggctcaagaattagttgaaaaattaggagctaaagtt
tctaactctgtttctagtaaaacagatattgttatagtaggcagtaatgctggaactaaa
gttaataaggcagataaacttggtattgaaatcatgtatgagaatgattttttatcttta
attaaatatgtttga
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