Leucobacter aridicollis: KI794_09670
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Entry
KI794_09670 CDS
T08768
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lari
Leucobacter aridicollis
Pathway
lari03030
DNA replication
lari03410
Base excision repair
lari03420
Nucleotide excision repair
lari03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI794_09670 (ligA)
03410 Base excision repair
KI794_09670 (ligA)
03420 Nucleotide excision repair
KI794_09670 (ligA)
03430 Mismatch repair
KI794_09670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lari03032
]
KI794_09670 (ligA)
03400 DNA repair and recombination proteins [BR:
lari03400
]
KI794_09670 (ligA)
Enzymes [BR:
lari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI794_09670 (ligA)
DNA replication proteins [BR:
lari03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI794_09670 (ligA)
DNA repair and recombination proteins [BR:
lari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI794_09670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI794_09670 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI794_09670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI794_09670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UTX52037
LinkDB
All DBs
Position
complement(2148401..2150752)
Genome browser
AA seq
783 aa
AA seq
DB search
MTESPAIPSDFEAARAESEALTADIERYRTAYHSQGVSLVSDAEYDVLFRRLEAIERAFP
ELAGQDSPTQEVGAALVSAGFPEHEHAERLLSLDNVFSLEEFREWAGKARAAAGREIRWL
SELKIDGLAISLAYRDGVLETATTRGDGRVGENITENVDFIPAIPRTLSGEGIPEFFEAR
GEVFLRREDFEWLNERQHQLQAAFADEQRARGVAEDRITIRYPEFANARNTAAGSLRQRA
DKKTAAELDLMRERLGRLSLYVHGIGAWAHPSFESQSDAYALLAGWGLPVSPHSRVFETV
DEVAEFIEDRGVHRHDIDHEIDGIVVKIDEFALHAELGETSRAPRWAIAYKYPPEEVHTK
LLDIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQDVVRAKGVLIGDTVILRKAGDV
IPEILGAVIERRDGSEVEWQMPTACPECGTTLRAMKEGDIDLRCPNARACPAQVRGRVEH
IGSRGALDVEVLGEITAAALTQPEIPAEPPLETEAGLFDLTLEELVPIVVIVRDAETGEP
VLEDETGEPRRRRPFQRVERTYPPGWEDKTPAERRAAGIRKDFDRTLPSKDAETFLAELE
RAKTKPLWRLIVSLNIRHVGPVAARALADWFGSLDAIRAASAEELAEVDGVGGIIAESLL
AWFEVDWHVDIVDRWAAAGVQWSTPGHAGPGAAQSAEGVLSGLTVVATGSLDGFTRDGAK
EAIIQAGGKAASSVSKKTDYVAAGPGAGSKLAKAEELGIPVLDAAGFAILVTQGPAGLPE
TAE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaatcacctgccatcccgagcgattttgaagccgcgcgcgccgagagcgaggct
ctcaccgccgacattgagcgataccgcaccgcgtaccattcgcagggcgtgagcctcgtg
tccgacgcggagtacgacgtgctgtttcgtcggcttgaggccattgaacgcgcgtttcct
gagctcgccgggcaagacagcccaacgcaagaggtcggcgcggcgctcgtgtctgccggg
ttccccgagcacgagcatgccgagcggttgctgagccttgacaatgtgttctctctcgag
gaatttcgcgagtgggcagggaaggcgcgagcggctgcaggccgcgaaatacgctggctc
tccgagctgaagattgacgggctcgcgatcagcctcgcttatcgggatggtgtgctcgag
accgcgacgacgcgcggcgacggccgggtaggcgagaacatcaccgaaaacgttgatttc
atccccgcgattccgcgaaccctttcgggcgagggcatccccgagttcttcgaggcccgc
ggcgaagtattcctgcgtcgggaagacttcgagtggctgaatgaacgacagcaccagttg
caggccgccttcgccgacgagcagcgggcccgcggcgtcgctgaagaccggatcacgatc
cgctaccccgagtttgcgaacgcccggaacaccgcggcgggtagcctcagacaacgtgcc
gacaagaaaacagcggccgaactcgacctcatgcgcgagcgactggggcggctttccctg
tacgtacacggaatcggtgcctgggcgcacccctcgttcgaaagccagtctgacgcgtac
gcgctccttgctggttgggggctgccagtctctccgcactcgcgtgtctttgaaacagtc
gacgaagtcgcggaattcattgaggaccgcggcgtgcatcgccacgacatcgatcacgag
attgacggcatcgtcgtgaagattgacgagttcgcgctccacgcagagctcggggagacg
agccgggcgccgcggtgggcaatcgcgtacaagtacccgccggaagaggtgcacacgaag
ttgctcgacatccgggtcggggtcggccgcacaggccgagccacgccgtacgcggtgatg
gagcccgtgaaagtcgcgggctcgacagtcagccaggcgacacttcacaaccaggatgtc
gtgcgcgcgaaaggtgtgctgatcggcgacacggtcatcctgcgaaaagcgggcgacgtg
atcccagagatcctcggggccgtcattgaacgccgcgacggcagcgaggtcgaatggcag
atgccgacagcgtgcccggagtgcggcaccacgttgcgggcgatgaaagagggcgacatt
gacttgcggtgcccgaacgcccgcgcctgcccagctcaggtgcgaggcagagtcgaacac
atcggatcacgcggcgcgctcgatgttgaagtactcggggagatcaccgcagctgctctc
acgcagccggagattcccgccgagccgccactcgaaaccgaggccggcctctttgatctc
acccttgaggagctcgtgccgatcgtcgtgatcgtgcgagacgcagagactggcgagccc
gttcttgaagacgagacaggggagccgcgtcgccgcaggcccttccaaagggtcgaacgt
acgtacccgcccggctgggaagacaagacccccgcagaacggcgtgccgctgggattcgt
aaggacttcgaccgtaccctgccgtcgaaagacgccgagacattcctcgccgagctcgag
cgcgcaaagacgaaacctctctggcgcctaatcgtgtcgctgaacattcgccatgttggc
cctgtcgctgctcgcgcccttgcggactggttcggctcgctcgacgcaatccgcgcagcc
tccgccgaggaactcgctgaggttgacggtgtcggtgggatcatcgcagagtcactgctc
gcctggttcgaggtcgactggcatgttgacatcgtcgatcgatgggccgccgcgggcgtg
cagtggtcgacgccaggccacgctggtcccggcgccgctcagagcgcggagggcgtgctc
tcagggctgactgttgtggcgaccggttcgctcgacgggttcacccgagatggtgcgaaa
gaagcaatcatccaggcggggggcaaggcagcctcgagcgtttcgaagaagacagactat
gtcgcagctgggcccggcgccggttcgaagctcgcaaaagcggaggagctcggcattccg
gtgctcgacgcggcaggcttcgcaatcctcgtgacccagggccccgcggggctgcccgag
accgcggagtag
DBGET
integrated database retrieval system
