Lawsonibacter asaccharolyticus: L9O85_06460
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Entry
L9O85_06460 CDS
T07961
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lasa
Lawsonibacter asaccharolyticus
Pathway
lasa03030
DNA replication
lasa03410
Base excision repair
lasa03420
Nucleotide excision repair
lasa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L9O85_06460 (ligA)
03410 Base excision repair
L9O85_06460 (ligA)
03420 Nucleotide excision repair
L9O85_06460 (ligA)
03430 Mismatch repair
L9O85_06460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lasa03032
]
L9O85_06460 (ligA)
03400 DNA repair and recombination proteins [BR:
lasa03400
]
L9O85_06460 (ligA)
Enzymes [BR:
lasa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L9O85_06460 (ligA)
DNA replication proteins [BR:
lasa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L9O85_06460 (ligA)
DNA repair and recombination proteins [BR:
lasa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L9O85_06460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L9O85_06460 (ligA)
MMR (mismatch excision repair)
DNA ligase
L9O85_06460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L9O85_06460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
Zn_ribbon_NUD
RUBY_RBDX
IBR_2
YuzC
Motif
Other DBs
NCBI-ProteinID:
UMM48044
LinkDB
All DBs
Position
1370716..1372689
Genome browser
AA seq
657 aa
AA seq
DB search
MDEKQELECLRRELVQANYEYYVQDAPTMTDYDYDHKLRRLEELEAAHPEWITPDSPTQR
VGGKALDAFQQVVHRVPLESLQDVFDFEELRQFDQRVRGAAPDARYVVEPKVDGLSVALE
YEDGVFVRGATRGDGRVGEDVTENLRTVRSIPMVIPDAPARLIVRGEVFMPKKVFHALNE
ERERRGEPLFANPRNAAAGSLRQLDPKVAARRRLDILVFNVQWVEGETFSTHLETLEYLK
THSFKVIPHYSCDQVEEAVARIARIGEERDSFPFDIDGAVVKVNDLSERELLGSTAKFPR
WAAAYKYPPEVKPSRVVDITVQVGRTGVLTPKAVLEPVRLAGTTVTSATLHNQDFITEKD
IRVGDTVLVRKAGEIIPEVLSVVAEERPEGTQPYRFPQVCPVCGAPVEREEDGAHIRCTG
AECPAQLLRNLAHFASRDAMDIEGLGIAVVENLVNAGLVKTPGDLYFLKEEDVAQLERMG
KKSAENLMAAIQRSKEQDLSRLIYAFGIRQVGQKAGKVLAARFGTLEALENATLEELTAV
DDIGEITARSVLEWMASPQSRHLMARLREAGVNTAAAEKGEDQRFAGMTFVLTGALERLT
REEAAAMIEDRGGKAASSVSKKTTYVVAGEAAGSKLRKAQELGVPVLSEEEFFRLME
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaacaggagctggagtgcctgcgccgggagctggtgcaggccaactatgag
tattatgtccaggacgcccccaccatgacggactacgactacgaccacaagctgcgccgg
ctggaagagctggaagcagcccacccggagtggatcaccccagactcccccacccagcgg
gtgggggggaaggccctggacgccttccagcaggtggtccatcgggtgcccctggagtcc
ctccaggacgtattcgactttgaggagctgcgccagtttgaccagcgggtgcggggcgcg
gcgccggacgcccgctatgtggtggagccaaaggtggacggcctctcggtggcgctggag
tatgaggacggggtcttcgtccggggggccacccggggggacggccgggtgggggaggac
gtcaccgagaacctgcgcaccgtccggtctatccccatggtcatccctgacgcccccgcc
aggctgatcgtgcggggggaggtgttcatgcccaagaaggtgttccacgccctcaatgag
gagcgggagcggcggggggagcccctcttcgccaacccccgcaacgccgccgccggctcc
ctgcggcagctggaccccaaggtggcggcccgccgccgcctggacatcctggtgttcaac
gtccagtgggtggagggggagaccttcagcacccatctggaaaccctggagtacctgaaa
acacacagctttaaagtgatcccgcattacagctgtgaccaggtggaggaggcggttgcc
cgcatcgcacggatcggggaggagcgggacagctttcccttcgatatcgatggagcggtc
gtaaaggtaaatgacctgtcagaacgtgagctgctgggcagcacggccaaattcccccgc
tgggcggcggcctacaagtaccccccggaggtgaagccctccagagtggtggacatcacg
gtccaggtgggccgcaccggggtgctcacccccaaagcggtgctggaaccggtgcggctg
gcggggaccaccgtgaccagcgccaccctccacaaccaggacttcatcacggagaaggac
atccgcgtcggggacacggtgctggtccgaaaggcgggggagatcatcccggaggtgctg
tccgtggtggcggaggagcggccggaaggcacccagccctaccgcttcccccaggtctgc
ccggtgtgcggcgctccggtggagcgggaggaggacggggcccacatccgctgcaccgga
gcggagtgccccgcccagctgctgcgcaatctggcccacttcgccagccgggacgccatg
gacatcgagggcctgggcatcgcggtggtggagaacctggtgaacgcggggctggtgaag
acccccggcgacctgtacttcctgaaggaggaggacgtggcccagctggagcggatgggc
aagaagtcggcggaaaacctgatggccgccatccagcgctccaaggagcaggacctgtcc
cggctgatctacgcctttggcatccggcaggtggggcagaaggcgggcaaggtcctggcg
gcccgctttgggaccctggaggccctggagaacgccaccctggaggagctcaccgccgtg
gacgacatcggggagatcaccgcccggagcgtcctggagtggatggccagcccccagagc
cggcacctgatggcccggctgcgggaggcaggggtgaataccgcagccgcggagaagggg
gaggaccagcgctttgcggggatgaccttcgtgctgaccggcgccctggagcgcctcacc
cgggaggaggcggcggccatgatcgaggaccgggggggcaaagcggcctcctccgtgtcc
aagaagaccacctatgtggtggcgggggaggctgccggctccaagctgcgcaaggcccag
gagctgggcgtcccagtgctcagcgaggaggaatttttccggctcatggagtga
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