Loxodonta africana (African savanna elephant): 100659928
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Entry
100659928 CDS
T04351
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100659928 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lav03041
]
100659928 (EFTUD2)
Spliceosome [BR:
lav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100659928 (EFTUD2)
Complex C
U5 SnRNP specific factors
100659928 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
100659928
NCBI-ProteinID:
XP_003414339
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGREAKDLDEMDDEEEEDDIGEHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKSKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattacattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagaagccaaagatcttgatgagatggatgatgaggag
gaggaggacgacataggagagcatgatgacgaccaccctgggatggaggtggtgctacat
gaggacaagaagtactaccccacagccgaggaggtgtacggtcctgaggtggagaccata
gtccaagaggaagacacccagcctctcacagaacccattattaagccagtgaaaaccaag
aaattcactctgatggagcagacgttacctgtcacggtgtatgaaatggatttcttggca
gatctgatggacaactcggagctcatcagaaatgtgaccctttgtggccatctccaccat
ggcaagacttgttttgtagattgtttaatagaacagactcacccagaaatcagaaaacgc
tatgaccaagatctgtgctacactgacatcctctttactgagcaagagagaggcgtcggc
atcaaaagcactcctgtgacggtggtcctgccagataccaaaggaaaatcttacctcttc
aatatcatggacactccaggacatgtgaatttttctgatgaggttacggctggcttgcgc
atctcggatggagtggttcttttcatcgatgctgctgagggggtgatgttgaacaccgag
cggctgatcaagcacgctgtgcaggagaggctggcggtcactgtgtgcatcaacaagatt
gaccgactcatcctggagctcaagctgcctccaactgatgcttactacaagctgcgccac
attgtagatgaggtcaatgggctaataagcatgtattccactgatgagaacctgatcttg
tccccgctcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacgttg
ggctcctttgccaagatctatgctgacacctttggtgacattaattaccaggaatttgct
aaaagactctggggtgacatctacttcaaccccaagacgagaaagttcacaaaaaaggcc
ccgactagcagctcccagaggagcttcgtagagtttatcttggagcccctttataagatc
ctcgctcaggtggtgggtgatgtggacaccagcctcccaaggaccctggatgaacttggc
atccacctgaccaaggaggagctgaaactaaacattcgccctctgctgagactggtctgc
aaaaagttcttcggcgagttcacaggcttcgtggacatgtgtgtacagcatattccctct
ccaaaggtgggcgccaaatccaagatcgagcacacctacactggcggcgtagactccgac
ctcggcgaggccatgagcgactgtgaccctgatggtcccctgatgtgccacactaccaag
atgtatagcacagatgatggagttcaatttcacgcctttggccgagtgctgagtggcact
atccatgctgggcagcctgtgaaggtcctgggggagaactacaccctggaggatgaggaa
gattcccagatatgcaccgtgggccgactttggatctctgtggccaggtaccatattgag
gtgaaccgtgttcctgctggcaactgggttctgattgaaggtgtcgatcaaccaattgtg
aagacagcgaccatcactgaaccccgaggcaatgaggaggctcagattttccgccccttg
aagttcaacaccacatctgtgatcaagattgctgtggagccagtcaacccctcagagctg
ccgaagatgctcgacggcctgcgcaaagtcaacaagagctacccatccctcaccaccaag
gtggaagagtccggtgagcatgtgatcctgggcaccggggagctctacctggactgtgtg
atgcatgatttgcggaagatgtactcagagatagacatcaaggtggctgacccagttgtc
acattttgtgagacggtggtggaaacgtcctccctcaagtgctttgctgaaactcccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggccttgcggaggacata
gaaaacgaggtggtccagatcacgtggaacaggaagaagttgggagagttcttccagacc
aagtatgattgggatctgctggctgcccgttccatctgggcctttgggcctgatgccacg
ggtcccaacatcctggtagatgataccctgccctctgaggtggacaaggctcttctcggc
tcagtgaaggacagcatcgtccaaggttttcagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaacgtcaagtttaagatcctggacgcagtggtggcccaggagccc
ctgcaccggggtgggggccagatcatccccacagccaggagagtcgtctattcagccttc
cttatggccacgcctcgtctgatggagccttactactttgttgaggtacaggcccctgca
gattgtgtctctgctgtttatactgtcctggccaggcgcagggggcacgtgactcaggat
gcacccatcccaggctcccctctctacaccatcaaagctttcatcccagccatcgactct
tttggctttgaaactgatctgcggactcatacccagggacaggccttttccctgtctgtc
ttccaccattggcagattgtacctggtgatcccctggacaagagcattgtcatccgcccc
ctggagccacagccagcccctcatctggcccgagaattcatgatcaaaacccgtcgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgatcctatgttgctggag
cttgccaagcaggatgttgtgctcaattaccccatgtga
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