Novilysobacter avium: INQ42_07505
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Entry
INQ42_07505 CDS
T08144
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03030
DNA replication
lavi03410
Base excision repair
lavi03420
Nucleotide excision repair
lavi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INQ42_07505 (ligA)
03410 Base excision repair
INQ42_07505 (ligA)
03420 Nucleotide excision repair
INQ42_07505 (ligA)
03430 Mismatch repair
INQ42_07505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lavi03032
]
INQ42_07505 (ligA)
03400 DNA repair and recombination proteins [BR:
lavi03400
]
INQ42_07505 (ligA)
Enzymes [BR:
lavi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
INQ42_07505 (ligA)
DNA replication proteins [BR:
lavi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
INQ42_07505 (ligA)
DNA repair and recombination proteins [BR:
lavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
INQ42_07505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
INQ42_07505 (ligA)
MMR (mismatch excision repair)
DNA ligase
INQ42_07505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
INQ42_07505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
VMAP-M8
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
QOW21142
LinkDB
All DBs
Position
complement(1666639..1668984)
Genome browser
AA seq
781 aa
AA seq
DB search
MSAPDPAARVAELCRQLDDASYRYYVLDDAAIPDAEYDRLLRELEGLEAAHPELAGADSP
TQRVGAPPSGAFASVTHAIPMLSLGNAFSDDEVADFVQRIEHRLERSDPVFSVEPKLDGL
AISLRYEDGRFVQGATRGDGATGEDVTANLRTVKAIPLALRGTDWPAVLEVRGEVYMPLA
GFHRYNERMRAEGGKPLANPRNGAAGSLRQLDPRITARRPLAFYAYAVGLVEGAELPPTH
SATLRQLRDWGFPVSAESRVATGLAGLLAYYRDIGERRDRLAFDIDGVVYKLDDYAGQLE
LGFVSRAPRWALAHKFPAQEQSTVLEAIEVNIGRTGAATPLARLTPVQVGGVEVSRATLH
NADQVARLDVRVGDTVIVRRAGDVIPEIVRVVPGMRAPDAQPWQMPTVCPVCGSDLVREE
GGVVWRCSGELVCPAQRKEAIEHFASRRAMDIDGLGERYVEDMVDFGYVTSVADLYTLSL
DDLLEMKRRGDERDGTTPDTVKAGKVATRWAENLIEAIQSSRRTTLARCLFGLGIQHVGE
STAKALAEWFGDLAVIRRLPWPLFKRVPDIGSEVAHSIGQFFDQPGNQKVIDELLAGGVE
ITDARPPSAQLRGALGLADLLVDLEIPKLTRLRAEQLAGVFAEASALLDAPVHRFITAGL
PNDTASALETWLTDAENASLLARCGEAIAALEKLIPEVDESTAGPLEGRTVVLTGTLAAM
TRDEAKARLEVLGAKSAGSVSKKTGFVVAGEAAGSKLAKAEELGIEIWDEAKLLAFLGKH
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcccgatcccgccgcccgcgtggccgagctgtgccgccagctcgacgacgcc
agctaccgctattacgtcctcgacgatgcggcgattccggacgccgagtacgaccgcctg
ctgcgtgagctggagggcctggaggcggcccatcccgaactggccggcgcggattccccg
acccagcgcgtcggtgcgccgccgtcgggtgccttcgccagcgtcacccacgccattccc
atgctctcgttgggcaacgccttcagcgacgacgaggtggccgatttcgtccagcgcatc
gagcaccggcttgagcgcagcgacccggtgttttcggtggagcccaagctggacggcctg
gccatcagcctgcgctatgaggatggccgcttcgtccagggcgcgacccgcggcgatggc
gccaccggtgaggacgtcactgccaacctgcgcacggtcaaggcgatcccgctggcactg
cgggggacggattggccggcggtgctggaggtccgtggtgaggtctacatgccgctggcg
ggcttccatcgctacaacgagcgcatgcgcgccgagggtggcaagccgctggccaacccg
cgcaacggcgccgccgggtccctgcgacagctggacccgcgcatcaccgcgcgccggccg
ctggcgttctacgcctacgcggtcggcctagtggaaggcgccgagctgccgccgacgcac
tcggcgacgctgcggcaactgcgcgactgggggttcccggtcagcgcggagagccgcgtc
gccaccggcctggccggccttctggcgtactaccgcgatatcggcgagcggcgcgaccgc
ctggccttcgacatcgacggcgtggtctacaagctggacgactacgccggccagctggaa
ctgggttttgtctcgcgcgccccgcgctgggcgctggcgcacaagttcccggcccaagag
cagtccacggtactggaggccatcgaggtcaacatcggtcgcaccggtgcggcgacgccg
ctggcccggctcaccccggtgcaggtcggcggggtcgaggtcagccgggcgaccctgcac
aatgccgaccaggttgcccggctggacgttcgcgtcggcgacacggtgatcgtgcgtcgc
gccggcgacgtgattcccgagatcgtgcgcgtggtgccgggcatgcgcgcgccggatgcg
cagccttggcagatgccgacggtgtgcccggtgtgcggctctgacctcgtgcgcgaggag
ggcggggtggtctggcgctgctcgggcgaactggtctgcccggcccagcgcaaggaggcg
atcgagcatttcgcctcacgccgggccatggacattgacgggctgggcgagcgctacgtc
gaggacatggtcgattttggttatgtcacctcggtagccgacctgtacacgctgtccctg
gacgacctgctggagatgaagcgccgcggcgacgagcgcgacggcacgacgccggacacc
gtcaaggcgggcaaggtggcgacccgctgggcggagaacctgatcgaggccatccagagc
agccgcaggacgaccctggcgcgttgcctgttcggtctgggcatccagcacgtcggcgag
agcaccgccaaggcgctggcggagtggtttggcgatctggcggtgatccggaggctgccg
tggccgctgttcaagcgggtgcccgacatcggctcggaggtggcccattcgatcggacag
ttcttcgaccagccgggaaaccagaaggtgatcgacgagctgctggctggcggcgtcgaa
attactgacgcccggccaccgtccgcgcaattgcggggcgcactcgggctggccgacttg
ctggtggacctggagatcccgaaactcacccgcctgcgcgccgagcagctggcgggcgtc
tttgccgaggcgtccgcgctgctggacgcgcccgtgcaccgcttcatcaccgccggcctg
cccaatgacaccgcctcggcgctggagacctggctgacggacgcggaaaatgccagcctg
ctggcgcggtgcggggaagcgatcgctgcgctggagaagctgatcccggaggtggatgaa
agcaccgccggcccgctggaaggtcgcaccgtcgtgctcaccgggaccttggccgcgatg
acgcgcgacgaggcgaaagcgcgcctggaagtgctgggcgcgaagtcggccggcagcgtg
tcgaagaagaccgggttcgtggtcgccggcgaggcggccgggtccaagctcgccaaggcc
gaggaactcggcatcgagatctgggacgaggcgaagctgctggccttcctcggcaagcac
gagtga
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