KEGG   Lelliottia amnigena: A8A57_15175
Entry
A8A57_15175       CDS       T04400                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
laz  Lelliottia amnigena
Pathway
laz03030  DNA replication
laz03410  Base excision repair
laz03420  Nucleotide excision repair
laz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:laz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A8A57_15175 (ligA)
   03410 Base excision repair
    A8A57_15175 (ligA)
   03420 Nucleotide excision repair
    A8A57_15175 (ligA)
   03430 Mismatch repair
    A8A57_15175 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:laz03032]
    A8A57_15175 (ligA)
   03400 DNA repair and recombination proteins [BR:laz03400]
    A8A57_15175 (ligA)
Enzymes [BR:laz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A8A57_15175 (ligA)
DNA replication proteins [BR:laz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A8A57_15175 (ligA)
DNA repair and recombination proteins [BR:laz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A8A57_15175 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A8A57_15175 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     A8A57_15175 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A8A57_15175 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: ANG93663
LinkDB
Position
complement(3246892..3248907)
AA seq 671 aa
MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGASPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDSLTWCCELKLDGLA
VSILYENGVLTRAATRGDGTTGEDITTNVRTIRAIPLTLRGDNIPARLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVDSERPEETRAIVFPTHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTLDALES
ATIDDLQKVQDVGIVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggactctatcgaacaacaattaacgcagctgcgaaccacgcttcgccatcatgaatac
ctgtatcacgtgatggatgccccggaagtcccggacgcggaatatgaccgcctgatgcgt
gaactgcgcgagcttgaatcacagcatccggaacttattaccccagattcgcctacccag
cgcgtgggggcgtctccgctggcgtcctttagccaggtacgtcacgaagtgccgatgctt
tctctggataacgtgtttgatgaagagagctttctggccttcaacaagcgcgtccaggac
cgtcttaaaagcacagattccctgacctggtgctgcgagcttaaactcgacggtctggca
gtgagcattttgtacgaaaacggcgttctgacccgcgccgccacgcgtggtgatggcacc
accggtgaagatatcaccaccaatgtgcgtaccatccgcgccatcccgcttacgctgcgt
ggcgataacattcctgcacgccttgaagtgcgcggcgaagtctttttaccgcaggccggc
tttgaaaaaattaacgacgaagcgcgtcgcaccgggggcaaggtgtttgctaacccgcgt
aatgcggctgcaggttccttgcgtcagctcgatccgcgcattacggcaaaacgcccgctg
acctttttctgttatggcgtcggcatccttgaaggaggtgagctgcctgacacccatctg
ggtcgcctgctgcagtttaaagaatggggcttgccggtaagcaaccgcgtgcagctttgt
gactcgccggaagcggttctggcgttctatcacaaggttgaagaagatcggccgacgctc
ggattcgatatcgacggcgtggtgattaaggttaactcgctggcacttcaggagcagtta
ggcttcgttgcccgtgcgccgcgctgggcggtggcctttaaattcccggcgcaagagcag
atgacgttcgtccgtgatgtcgagttccaggtaggccgtaccggtgccattacgcccgtt
gcccgcctggagcctgtgcaggtcgcgggtgtactggtcagtaatgccacgctgcataac
gcggatgagattgcccgcctgggcttgcgcattggcgataaggtcgtcattcgccgtgcg
ggagacgtgatcccgcaggtggtgaacgtagtggattcagaacgccctgaagagacccgc
gctatcgtcttcccgacgcattgtcccgtgtgcggctcggatgtggaacgcgttgaaggg
gaagtggtgacacgctgtacgggcggcttaatctgcggcgcgcagcgtaaagaggcgctt
aagcatttcgtgtcgcgtcgggcgctggacgttgacgggatgggcgacaaaattatcgac
cagcttgtcgaaaaagagtatgtccatacccccgccgatctcttccgtctgaccgccggg
aagctgaccgggctggatcgaatgggaccaaagtctgcacagaacgtggtgaatgcgctc
gaaaaatccaaagagacgaccttcgcacgcttcctgtatgcgctgggcatccgcgaagtc
ggcgaggcaacggcggcgggattagcggcccactttgggaccctcgatgcgctggagagt
gcgactatcgacgatctacaaaaagtgcaggatgttggtattgtcgttgctacgcatgtc
ttcaatttctttgccgaagagagtaaccgcgatgtgatcggtcagctactcgccgagggg
atccactggccagcgccgattgtcgtcaatgcggaagagatcgacagcccgtttgccgga
aaaaccgtggtattaaccggtagcctgagccagctttctcgtgatgatgctaaggcgcgg
ctggtcgccctgggggcgaaagtggcaggcagcgtgtcgaagaaaaccgatctggtgatt
gcaggcgaggccgcaggctcaaaactggcgaaagcgcaggagctgggaatcgacgttatc
gacgaagccgaaatgctccgcctgttaggagagtga

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