Lelliottia amnigena: A8A57_15175
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Entry
A8A57_15175 CDS
T04400
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
laz
Lelliottia amnigena
Pathway
laz03030
DNA replication
laz03410
Base excision repair
laz03420
Nucleotide excision repair
laz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A8A57_15175 (ligA)
03410 Base excision repair
A8A57_15175 (ligA)
03420 Nucleotide excision repair
A8A57_15175 (ligA)
03430 Mismatch repair
A8A57_15175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laz03032
]
A8A57_15175 (ligA)
03400 DNA repair and recombination proteins [BR:
laz03400
]
A8A57_15175 (ligA)
Enzymes [BR:
laz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A8A57_15175 (ligA)
DNA replication proteins [BR:
laz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A8A57_15175 (ligA)
DNA repair and recombination proteins [BR:
laz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A8A57_15175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8A57_15175 (ligA)
MMR (mismatch excision repair)
DNA ligase
A8A57_15175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A8A57_15175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ANG93663
LinkDB
All DBs
Position
complement(3246892..3248907)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGASPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDSLTWCCELKLDGLA
VSILYENGVLTRAATRGDGTTGEDITTNVRTIRAIPLTLRGDNIPARLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVDSERPEETRAIVFPTHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTLDALES
ATIDDLQKVQDVGIVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactctatcgaacaacaattaacgcagctgcgaaccacgcttcgccatcatgaatac
ctgtatcacgtgatggatgccccggaagtcccggacgcggaatatgaccgcctgatgcgt
gaactgcgcgagcttgaatcacagcatccggaacttattaccccagattcgcctacccag
cgcgtgggggcgtctccgctggcgtcctttagccaggtacgtcacgaagtgccgatgctt
tctctggataacgtgtttgatgaagagagctttctggccttcaacaagcgcgtccaggac
cgtcttaaaagcacagattccctgacctggtgctgcgagcttaaactcgacggtctggca
gtgagcattttgtacgaaaacggcgttctgacccgcgccgccacgcgtggtgatggcacc
accggtgaagatatcaccaccaatgtgcgtaccatccgcgccatcccgcttacgctgcgt
ggcgataacattcctgcacgccttgaagtgcgcggcgaagtctttttaccgcaggccggc
tttgaaaaaattaacgacgaagcgcgtcgcaccgggggcaaggtgtttgctaacccgcgt
aatgcggctgcaggttccttgcgtcagctcgatccgcgcattacggcaaaacgcccgctg
acctttttctgttatggcgtcggcatccttgaaggaggtgagctgcctgacacccatctg
ggtcgcctgctgcagtttaaagaatggggcttgccggtaagcaaccgcgtgcagctttgt
gactcgccggaagcggttctggcgttctatcacaaggttgaagaagatcggccgacgctc
ggattcgatatcgacggcgtggtgattaaggttaactcgctggcacttcaggagcagtta
ggcttcgttgcccgtgcgccgcgctgggcggtggcctttaaattcccggcgcaagagcag
atgacgttcgtccgtgatgtcgagttccaggtaggccgtaccggtgccattacgcccgtt
gcccgcctggagcctgtgcaggtcgcgggtgtactggtcagtaatgccacgctgcataac
gcggatgagattgcccgcctgggcttgcgcattggcgataaggtcgtcattcgccgtgcg
ggagacgtgatcccgcaggtggtgaacgtagtggattcagaacgccctgaagagacccgc
gctatcgtcttcccgacgcattgtcccgtgtgcggctcggatgtggaacgcgttgaaggg
gaagtggtgacacgctgtacgggcggcttaatctgcggcgcgcagcgtaaagaggcgctt
aagcatttcgtgtcgcgtcgggcgctggacgttgacgggatgggcgacaaaattatcgac
cagcttgtcgaaaaagagtatgtccatacccccgccgatctcttccgtctgaccgccggg
aagctgaccgggctggatcgaatgggaccaaagtctgcacagaacgtggtgaatgcgctc
gaaaaatccaaagagacgaccttcgcacgcttcctgtatgcgctgggcatccgcgaagtc
ggcgaggcaacggcggcgggattagcggcccactttgggaccctcgatgcgctggagagt
gcgactatcgacgatctacaaaaagtgcaggatgttggtattgtcgttgctacgcatgtc
ttcaatttctttgccgaagagagtaaccgcgatgtgatcggtcagctactcgccgagggg
atccactggccagcgccgattgtcgtcaatgcggaagagatcgacagcccgtttgccgga
aaaaccgtggtattaaccggtagcctgagccagctttctcgtgatgatgctaaggcgcgg
ctggtcgccctgggggcgaaagtggcaggcagcgtgtcgaagaaaaccgatctggtgatt
gcaggcgaggccgcaggctcaaaactggcgaaagcgcaggagctgggaatcgacgttatc
gacgaagccgaaatgctccgcctgttaggagagtga
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