Leptotrichia buccalis: Lebu_1168
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Entry
Lebu_1168 CDS
T00975
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lba
Leptotrichia buccalis
Pathway
lba03030
DNA replication
lba03410
Base excision repair
lba03420
Nucleotide excision repair
lba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lebu_1168
03410 Base excision repair
Lebu_1168
03420 Nucleotide excision repair
Lebu_1168
03430 Mismatch repair
Lebu_1168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lba03032
]
Lebu_1168
03400 DNA repair and recombination proteins [BR:
lba03400
]
Lebu_1168
Enzymes [BR:
lba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Lebu_1168
DNA replication proteins [BR:
lba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Lebu_1168
DNA repair and recombination proteins [BR:
lba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Lebu_1168
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lebu_1168
MMR (mismatch excision repair)
DNA ligase
Lebu_1168
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lebu_1168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
MCM_OB
UPF0758_N
DUF4407
Rhodanese_C
Motif
Other DBs
NCBI-ProteinID:
ACV39062
UniProt:
C7NA81
LinkDB
All DBs
Position
complement(1255496..1257616)
Genome browser
AA seq
706 aa
AA seq
DB search
MNLFNQDENNKKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDAL
MRELKQLEQEYPELLENSENSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDK
RVKKIILSQIDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTEN
IREISSIPKKLKDPVSLEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLD
KTIVADRGLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDK
WHDKRKTLDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVG
RTGVITPVAELEAVNLSGSVVKRASLHNFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVVF
DDRTGKEIEIQEPTNCPVCNSELSHEEGLVALKCHNPLCPEKVKRQIAYFVSRDAMNISG
LGDKIVEKFIELGKIKTIVDIYSLEKYREELENLEKMGQKSVDNLINSIESSKTRDFSKV
LYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDENNWK
IITDLQNIGLQFAIDETNLEKIADNPIKDKNFLATGKLQKYKRNDIKDIILSKGGNYLSV
VSKNLDFLIAGEKAGSKLEKAEKLGIRVLTEEDFEKEFLENINENI
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctatttaatcaagacgaaaacaacaaaaaacaaaatattaataatgaaaaaaat
atcaatttttctaaaattcaagaaaaatataaaaaattaagaaatgaaattgaatatcac
aataatctttattataacgaagataatcctattatttctgatatggaatacgacgcttta
atgcgtgaattaaaacagcttgaacaggaatatcctgaattgctggaaaatagtgaaaac
tcgcctactaaaaaaattggagggactgcgagtgaaaaattttcaaaagtgcggcatcga
acgccaatgcttagtttatcaaatacttataatatttctgaaattgaagattttgacaaa
cgagtgaaaaaaattattttatctcaaattgatgaaaataaaaataatgatgaaaatttg
gaatatattttggaactcaaattggatgggcttagcataagcctgatttatgaaaatgga
gagcttgttcaggctgttacaagaggagatgggcaaattggggaagacgttacagaaaac
attagggaaatttcaagtattcctaaaaaattgaaagatccagtttcattggaagttcgt
ggagaaattattttgccaatatcaaatttcaatcgaataaatcaagagcgtgaagatgat
ggtgaagatgtttttgcaaatccaagaaatgcagcatctggaacaatcaggcagctagat
aaaacaattgttgcagatcgaggacttgactgttatctttattatttggtaaatgctgaa
aattatgggataaatactcatttggaaagcattgaatacataaaaaatcttgggtttcaa
actacaggagtatttgaaaaatatactgatttcacagaattggaaaaatctattgacaaa
tggcacgataaacgaaaaacactcgattatgaaacagacggccttgttataaaagtaaat
aattttgcactttacgaaacacttggctacacaactaaaagcccacgatgggcaattgcc
tacaaatttcctgctgaacaagtaaaaactaaattaacggacgtaactttccaagttgga
agaactggtgtaattactcctgttgctgaacttgaagccgtgaatttatcaggttctgtt
gtgaaaagagcaagtttacacaactttgatgaaattcgcagaaaagatataaaaattggc
gataacgttattgtagaaaaagcggcagaaattattccacaagttgtaaatgtcgtattt
gatgatagaactggaaaagaaattgagattcaggagccaacaaattgtcctgtctgcaac
agcgaactttcccacgaagaaggacttgtcgcattaaaatgccataatccactttgcccc
gaaaaagtcaaacgccaaattgcctattttgtttcccgtgacgcaatgaatatttctgga
cttggcgataaaattgtcgaaaaatttatcgaattaggaaaaataaaaacaatagttgat
atttattcgcttgaaaaatatcgtgaagaacttgaaaatctggaaaaaatgggacaaaaa
agtgtagataacttgataaatagtattgaatccagtaaaactcgtgatttttcaaaagtc
ctctacgcacttggaattccttttgttggaaaattcaatgcgaatcttttgacaaaaact
tttaaaaatattgaaaatcttaaaaatcagtcaattgaaaatttactggctgtaaaagga
atcggcgataaagtagcagttgctgtaaatactttcttaaatgatgaaaataattggaaa
attattaccgatttacaaaatatcggattacagtttgctattgatgaaactaatttagaa
aaaatagcagataatcctataaaagacaaaaacttccttgcaactggaaaactgcaaaaa
tacaaacgaaatgacataaaagatattattctgtctaaaggcggaaattatctgtcggta
gtttcaaaaaatctagattttttaattgctggggaaaaagctggaagtaaacttgaaaaa
gctgagaaattaggaattcgtgtgcttacagaagaagattttgaaaaagaatttttggaa
aatataaatgaaaatatataa
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