Lycium barbarum (goji berry): 132603077
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Entry
132603077 CDS
T09483
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132603077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132603077
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132603077
Complex C
U5 SnRNP specific factors
132603077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
SRPRB
Motif
Other DBs
NCBI-GeneID:
132603077
NCBI-ProteinID:
XP_060171941
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All DBs
Position
7:8715712..8722160
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AA seq
987 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQESDREEEDDELPDRSEDERAASDGEQPGASNGWLATQED
VDMDNQVVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPTLVRNVALVGHIHHGKTLFMDMLIEQTHHNSTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMTAALRLADGAVLIV
DAVEGVMVNTERAIRHAIQDRIPIVLVINKVDRLITELKLPPKDAYFKLKHIVETVNSQI
TAASSTAGNAQVIDPALGNVCFASATAGWSFTLQSFAKLYVKLHGVAFDASKFASRLWGD
FYYDPDTRGFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
DCDPTGPLMVNVTKLYPKSDCSTFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNLEFDEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
IDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSSFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttatatgatgaatttgggaactatattggtcctgaaatagagtcggat
caggaaagtgatagggaagaggaagatgatgagctccccgataggagtgaagatgagaga
gctgcatctgatggtgagcagcctggtgcatcaaatggatggctggctactcaagaagac
gttgacatggataaccaagttgtccttgctgaagacaagaaatactacccgacagctgaa
gaggtttatggtgaagaagtcgagacgttagtcatggatgaagatgaacagcctctcgaa
atgcctataattaaaccggtgaagaatctcaagtttgaacttggggtaaaggattcatcc
acctatgtttcgactcagtttctcttaggtctgatgtcgaacccaacgttagttcggaat
gttgctttagtgggacacatacatcacgggaagaccttgtttatggatatgctgattgag
caaacacatcataattccacgtttgatcagaacagtgagaagcatatgaggtatacggat
acaagaatagatgagcaagagaggaggatatcgattaagtccgtccctatgtcactagtc
ctcgaagacagtaattcaaagtcttacctttgtaacattatggatgctcctggtcatgtt
aacttctccgatgaaatgacagctgctctgagacttgctgatggggcagttttgattgtt
gatgccgttgaaggagtgatggtaaatacagaaagggccattcggcatgcgattcaagat
cgtattccgatcgttcttgtgataaacaaggttgacagattgataactgagcttaaactg
cctccgaaggacgcctacttcaaattaaagcacatagttgaaactgtcaacagtcaaatt
acagctgcctcgtctacagctggaaatgcacaagtaattgatcctgcattagggaatgtc
tgctttgcaagtgcaacagcaggatggtcattcacattgcagtcatttgccaaactgtat
gttaagcttcacggcgttgcatttgatgccagcaagtttgcatcgcggctttggggggac
ttctactatgatcctgacacgagaggtttcaagaagaaaccacctgcaagtggggtcgaa
agatcttttgtgcagtttgttcttgaacctctttacaaaatctatagccaagtgattgga
gagcacaagaagagtgttgaagcaaccctggcagaacttggagtgacacttagcaatgca
gcttaccgtctaaatgtaaggcctctgctgaggttggcttgtagtgctgtttttggcact
gccactgggtttactgacatgttggttcatcacattccttctgctaaagctgctgcagct
aggaaagtggaacacatatacacgggtccaaaggattcagcaatttacaaagcaatggaa
gattgtgatcccactggccctttgatggttaatgtgaccaagctgtatcccaaatcagat
tgtagtacttttgatgcttttggtagggtttacagcggcgaaataatgacagggcagaca
gtacgagttctgggagagggctattcacctgatgatgaagaggatatgactgtaaaagaa
gttacaaagctgtgggtatatcaagctagatacaggatacccataagtaaggcacctcca
ggtgcttgggttctgattgaaggagtggatgcttcaatcatgaaaactgctactctttgt
aatctggaattcgatgaggatgtatacatatttcggccccttcagttcaatactcttccc
gtggtgaaaacagctaccgagcctttgaatcctagcgagttgcccaaaatggtggagggg
cttaggaaaatcagcaagagttatcctcttgcaatcacaaaggttgaagagtccggtgaa
cacacaatattaggtactggtgaattgtacctagattccataatgaaggaccttagagag
ctttactctgaggtggaagtgaaggtggctgatccagttgtctcgttctgtgaaactgtc
gtggagtcatcttcaatgaaatgttttgctgaaacacctaacaagaaaaataaaatcacc
atgattgctgaaccactggagagaggacttgctgaggacatcgagaacggtgttgtaagc
atagattggccaagaaagaaacttggtgactttttccaaaccaaatatgactgggatctg
cttgctgcacggtctatttgggcatttggacctgataagcaggggcctaacatcttattg
gatgatacactctctagtgaagtggacaagagcttgttgaatgctgtcaaagactctatt
gttcaggggttccaatggggagctcgggaaggacccctctgtgatgagcccattagaaat
gttaaattcaaaatagtcgatgcaaagattgcaccggagccattgcatcgtggaacgggt
cagattattccaactgcacgtcgtgtagcctactcttctttcctcatggcaacacccagg
cttatggaacctgtatattatgtggagatccaaacgcccatggattgtctctctgctata
tacaccgtgttgtctcgcaggcgtggacatgttactgctgatgttcctcaacctgggacc
cctgcctacattgtcaaggcatttttacctgtcattgagtcctttggttttgaaacggac
ttgaggtatcacacccaagggcaggcgttttgtctttcggtgtttgatcattgggctatt
gtccctggggatcctcttgacaagagcattgttttacgaccactggagcctgccccaatt
cagcatctggctcgtgagttcatggtgaagacaaggcgtagaaagggaatgagtgaagac
gtgagcatcaacaagttctttgacgaggctatgatggtggagcttgcgcagcaggatgct
gatcttcacctgcagatgatgtag
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