Lycium barbarum (goji berry): 132617138
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Entry
132617138 CDS
T09483
Name
(RefSeq) transcription factor PIF4 isoform X1
KO
K16189
phytochrome-interacting factor
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
132617138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lbb03000
]
132617138
Transcription factors [BR:
lbb03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
132617138
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
bHLH_NPAS4
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
132617138
NCBI-ProteinID:
XP_060188048
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All DBs
Position
11:complement(27395558..27400520)
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AA seq
489 aa
AA seq
DB search
MNPCLPEWNIEAELAVPHQKKAMGFDHELVELLWRNGEVVLHSQTHKKQPGYDQFNKHDQ
QTIRVAGSIGNQTNLIQDDETVPWLDCPIDDSFDKEFCSPFLSEISTTPLEADKSIRQSE
DNNKVFKFDPLEINHVLPQQHHSVFDPNPMPPPRFHNFPPPVRSSNVQLGGKEASRSNVK
EVSVMTVGSSHCGSNQVAIDADTSRFSSSTAKRGLSAAMITDYTGKVSPQSDTMDRDTFE
PANTSSSGGSGSSYARTCNQSIATNSQSHKRKTRDGEEPECQSKADELESAGGNKSAQKS
GTARRSRAAEVHNLSERRRRDRINEKMKALQELLPHSTKTDKASMLDEAIEYLKSLQMQL
QMMWMGSGMASMMFPGVHHYMSRMGMGMRPPTVPSIHNAMHLARLPLVDPAMTQAAPNQA
AMCQNSMLNQVNYQRHMQNPNFADQYASYMGFHPLQGASQPMNIFGLGSHTAQQGQLLPR
PTTSNAPTT
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttgtctacctgaatggaatattgaggctgaacttgctgttccacatcaaaag
aaggccatgggatttgatcatgagctagtggagctattgtggcgaaatggggaagtagta
ttacacagccaaacacataaaaagcagccaggctatgatcagtttaacaaacatgatcaa
caaacaataagagttgctggatccattggaaatcagaccaatttgattcaagatgatgaa
actgtcccatggcttgactgccctatcgatgattcgttcgataaagagttttgttcccct
ttcttatctgaaatttcaacaactccattagaagctgataagtcaattaggcaatcagag
gacaacaataaggttttcaagtttgatccattagagatcaaccatgttcttccacaacaa
catcattccgttttcgatccaaatccaatgccccctccaagatttcacaactttcctcca
cctgtaaggtcctccaatgtgcagcttggtggcaaagaagcttctagaagcaatgttaaa
gaagtgtctgtgatgacagttggttcaagccactgtgggagcaatcaagttgctattgat
gctgatactagccgattttcgagcagtactgcaaaaagaggtttatctgcagcaatgatc
actgattatactggaaaagttagtccacaaagcgatacaatggaccgagacacatttgaa
ccagctaatacatcatcgtcaggcggatcgggtagtagttatgcaagaacatgcaatcaa
tctatagctaccaatagccagagccacaaaaggaaaaccagagatggtgaagaaccagaa
tgccagagtaaagctgatgagctagaatcagctggaggaaacaagtcagcccaaaaatct
ggaactgcgcgaaggagccgtgctgcagaagtgcataacctatctgaaaggagacggagg
gatagaatcaacgagaagatgaaggccctgcaagagcttcttcctcactctactaagact
gataaagcatcaatgctggatgaggctattgaatacttgaagtcacttcagatgcaactt
cagatgatgtggatgggaagtggcatggcatcaatgatgtttcccggtgtccatcactac
atgtcaagaatgggaatggggatgcgcccgcccacggttccttccattcacaatgctatg
catttagctaggcttcctttggttgatccagcaatgacacaagctgcgcctaatcaagct
gcaatgtgccagaattcaatgttgaatcaagttaactatcaacgccatatgcagaatccc
aactttgctgaccaatatgccagttacatggggttccatccacttcaaggtgcttctcag
cctatgaacatttttggcttaggttcacatacagcacagcaaggtcagctgttaccgcgt
ccgactactagtaatgcacccaccacttga
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