KEGG   Lycium barbarum (goji berry): 132634979
Entry
132634979         CDS       T09483                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132634979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lbb03021]
    132634979
Enzymes [BR:lbb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     132634979
Transcription machinery [BR:lbb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     132634979
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 RNA_pol_Rpb1_7 Zf-C2H2_ZNF451
Other DBs
NCBI-GeneID: 132634979
NCBI-ProteinID: XP_060207159
LinkDB
Position
4:5830228..5846146
AA seq 1444 aa
MERDLNIELQVPEGSLRGINFNILSETDAAKLSAKVIGAVNEVTDPALGFPNPIFECSTC
GAKDGKNCEGHLGLIIFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGADRTSACKY
CDGVLRGYPPTKFKVSPRDTFGRTAIIAEVNENLLKKLQHTSGGSLASDYWDFIPYDAQQ
DASLNSSKYKRVLSHAQVYSILKDVDPGFLEGLLKRKNSIFLNSCLLTPNCHRVTEFGQH
MIFDESNRHFRKMIDFRGTANDLSVCVLDRIKASKIRAERSIINDPNAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPRHVAENLHFAEPLSSRNWEKLTDQCDLMILQKG
RIVVRRNGVLVPISVMDQLHRGDIIYRPLIDGDVVLINRPPSIHQHSLVALSVRILPINS
VLSINPLVCSPFRGDFDGDCLHGYIPQSVDSRIELNELVALNQQLIDGQNGQNLLSLSHD
SLTAAHLILEQGVFLDQFQMQQLQMFCPRQAGMPAILRAPSGNKCYWTGKQLFSLFLPSD
LEYNFPSNDVCISEGEIVTSSGGSSWLHDSSENLFYSLVKRHGGETLGFLYAAQTVLCEW
LSMRGLSVSLSDLYISSNPYSRENMIDEVFSGLQEAERLSYIQLLMIKYNKDFLAGSLEE
SKNSMGFDLEFMSIMQQKSASLSQASATAFKKVFRDVQNLVYNYASNENSFLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKSHRVFEKAHNNIPCAVVENSF
LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDVYVGYDGTVRNAYGNQIVQ
FSYYETDRIASTKGTGDSDRIASHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLL
NLKKILESGVGSRSGEKTASLFLSKRLGRWAYGFEYGALEVKGHLERLLLSDVVSTVMIC
FSSETHKSSHSSPWVCHFHIDKENVKTKRLKLRSVLDALNMRYHAARKKAGTDLPNLHIT
CKDCSVAEARKENSRICITVAVAETSKESFSLLDRLRVRVIPFLLETVIKGFSAFKKVDI
LWRELPSTSKSGRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRELIDWERSHPDDVH
DLTVAYGIDVAWDYFLRKLHSAVSDTGKKILPEHLVLAADCLTATGEFVPLSAKGLTLQR
KAAGVVSPFMQACFSNPGDSFVRAAKMGLSDDLQGSLESLAWGKSPSIGSGSSFEIIYSG
KGYEPAKPTDVYALLRNHVTSNKPKVKVTLNEDNEMAGKSLAQRLYKLDDLNKKCCRSQW
SIANLRKFLSFNDIKKLSQALKQMLSKYAIDCALSEADKSLAMMALHFHPRRSEKIGKGA
LEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELIAPQKAKTYKWVNGASGTS
TCNC
NT seq 4335 nt   +upstreamnt  +downstreamnt
atggagcgtgatctaaatattgagctgcaagtgccagaaggttctttgaggggcataaat
ttcaatatcttatcagagactgatgcagccaaattgtcagctaaggtaattggagcagtt
aatgaagtaacagatcccgcattgggatttccaaatccaatctttgagtgttcgacatgt
ggtgcaaaagatgggaaaaactgtgaaggtcacttgggattaataatctttccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcctgaagaagatatgtccaggg
tgtaaatctgtccgtcgtgataaggtcaagggtgctgataggacatctgcctgcaaatac
tgtgatggagttttaagaggctatccaccaacgaaatttaaagtatctcctagagacacg
tttgggaggactgccattatagcggaagttaatgaaaatttgttaaagaagcttcagcat
acttctggaggaagtttggcatctgactattgggatttcattccatatgatgcacaacaa
gatgcaagcttaaattcttccaagtacaaaagagttttatcacatgctcaggtatatagc
attctgaaagatgttgatccagggtttcttgaaggacttctcaaaaggaagaactcaatc
ttccttaatagctgccttttgactcctaattgtcatcgagttactgaatttgggcagcat
atgatatttgatgaaagtaataggcatttcagaaagatgattgactttagaggaacagca
aatgacttgagcgtgtgtgttttagatagaattaaagcttccaagatacgtgccgagaga
tcgataatcaacgatcctaatgcccctgctactggtttgaagtatgtgaaagaactagtt
ctggcaaaacgcactaatcatgctttccgcatggttgtggttggtgatcctaacatagag
ctaggtgaaattggtattccccgtcatgttgcggagaatctccactttgcagaacctcta
agttcgcggaattgggaaaagctgactgatcaatgtgatcttatgattcttcagaaggga
aggattgtcgtccgcagaaatggtgtcttagttcccattagtgtaatggaccagttgcat
agaggggatattatatatagacctcttattgatggagatgttgtgttgataaaccgacct
ccgtctattcatcaacattcactagttgctctgtctgttaggattcttccaataaattct
gttctttcaattaatccccttgtctgttctccattccgtggggattttgatggcgattgc
cttcatggttatattccccaatcagtcgattctaggattgagcttaatgagcttgttgct
ctgaatcagcagttgattgacggacagaatggtcaaaatcttctttcattaagtcatgat
agcttaactgctgctcatttaattttggaacaaggagttttcttggaccagttccagatg
cagcagctacaaatgttttgtccccgtcaagcgggaatgcctgctatcttaagagcacca
tcaggtaacaagtgttattggactgggaaacagttattcagcttgtttttgccatcagac
cttgaatataattttccatcaaatgacgtctgtattagtgagggggaaattgtgacatct
tctggtgggtcttcttggctgcatgattccagtgaaaatcttttttatagtcttgttaaa
cgccatggaggtgaaactcttggcttcctttatgctgcacagactgttctttgtgagtgg
ctgtcgatgaggggccttagtgtttcattgtccgatctttacatatcttctaatccatat
tcccgcgaaaatatgatcgatgaggtcttttccggtttgcaagaggcagaacgactatcg
tatatccaactgctgatgattaagtataataaggatttccttgctggaagcttagaagaa
agcaagaactccatgggttttgatttggagtttatgtctatcatgcagcagaaatcagct
tccctgagtcaagcttctgctactgctttcaagaaagttttccgggatgtccagaatttg
gtatataattatgccagcaacgagaattcatttctggctatgttaaaagctgggagtaag
ggcaacctcttaaaactggtccaacacagcatgtgtcttggtttgcagcagtctttggtt
ccattatcatttagaatgccccgccaactttcttgtgatgcatggaacaatcataaatca
catcgtgtttttgagaaagctcataacaatatcccatgtgctgtggttgagaattcattt
cttgcgggtttgaatcctctggagtgttttgtgcattcgttaaccacccgcgatagttct
tttagtggacatgctgatgtttcgggaactttgaaccgtaagcttatgtttttcatgcgt
gatgtgtacgttggatatgatggaacagtgagaaatgcttacgggaatcagattgtgcag
ttctcttactatgaaacagaccgaattgcttctactaagggcactggtgattcagaccga
attgcttctcatgcaattggtggtcatcctgttggttcattggcagcctgtgccatttca
gaagctgcatatagtgctttggatcaacctgtcagtgcacttgagtcatcacctttatta
aacctgaagaaaatattggaatctggagtagggagtcgtagtggcgagaaaactgcatcg
ctgtttctttcaaaaagacttggcagatgggcttatggttttgaatatggagctttagag
gtcaagggtcatctagaaaggcttcttctttcagatgttgtttctacagtaatgatatgc
ttctcctctgaaacacataaaagctctcacagtagtccctgggtctgtcattttcatata
gataaggaaaacgtgaagacaaaaaggcttaagctgagatcagttttagatgctcttaat
atgagatatcatgcagcaagaaagaaagctggaactgatcttccaaacctgcatataaca
tgcaaggattgttcagttgctgaagcgcgaaaagagaattccagaatttgcatcacagtt
gctgtggctgagacctcaaaggaatctttttcacttctggataggctgcgtgttagggtg
atcccattccttcttgagacggtgatcaaaggtttctccgcatttaaaaaagttgatatc
ttatggagagagttgccaagtacatcaaaatctggcaggggctctaccggggaactatat
ttgcaggtcttcatgtctgaaagttgtgacagaatcaaattctggaatgcgcttgtggat
agttgcctccaaataagggaattgattgattgggagcgcagtcatcctgatgatgtccat
gatctgactgtagcctatggaattgatgtagcatgggattactttctacgtaaactacat
tctgccgtctctgatactggcaagaaaatccttccagaacacttggtacttgcagcagat
tgtctcacagctacaggagaatttgttcccttgagtgccaaagggctgacgctgcaaaga
aaggctgctggtgttgtttcgccgtttatgcaagcgtgcttttcgaatccaggggactcg
tttgttagggctgccaagatgggattaagtgatgatcttcaagggagtctggaatcactg
gcatggggaaagagtccttccataggcagtggttcttcatttgaaattatctactctgga
aagggatatgagcctgctaaaccaacagatgtgtatgctctgctgcgtaaccatgtcaca
tcaaataagccaaaggtgaaggtcactcttaatgaagacaatgaaatggctggaaagtct
cttgctcaacgtctttataagcttgatgatctcaataaaaagtgttgtagaagccagtgg
tcaattgcaaatttgagaaaattcctttcattcaacgacataaagaagctctctcaggca
ctgaagcaaatgttgtccaaatatgctattgattgcgcgttaagtgaagcagacaagtcc
ctagcaatgatggcattacattttcatccccgaaggagtgagaagattggaaaaggcgca
ctggaaataaagattggttaccacaaagaatatgaagattcgcgctgctttatgttggtg
cgtacagatggaactgttgaagacttctcgtatcgcaagtgcctacaacatgctctggaa
ctgattgctcctcaaaaggcaaaaacctataaatgggtgaatggagcatctggcacgagt
acgtgcaattgttga

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