Nicoliella spurrieriana: MOO44_05560
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Entry
MOO44_05560 CDS
T08428
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbe
Nicoliella spurrieriana
Pathway
lbe03030
DNA replication
lbe03410
Base excision repair
lbe03420
Nucleotide excision repair
lbe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MOO44_05560 (ligA)
03410 Base excision repair
MOO44_05560 (ligA)
03420 Nucleotide excision repair
MOO44_05560 (ligA)
03430 Mismatch repair
MOO44_05560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbe03032
]
MOO44_05560 (ligA)
03400 DNA repair and recombination proteins [BR:
lbe03400
]
MOO44_05560 (ligA)
Enzymes [BR:
lbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MOO44_05560 (ligA)
DNA replication proteins [BR:
lbe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MOO44_05560 (ligA)
DNA repair and recombination proteins [BR:
lbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MOO44_05560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MOO44_05560 (ligA)
MMR (mismatch excision repair)
DNA ligase
MOO44_05560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MOO44_05560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UQS86385
UniProt:
A0A976X522
LinkDB
All DBs
Position
1016940..1018952
Genome browser
AA seq
670 aa
AA seq
DB search
MSAKLSEQAAKQRIDQIKPKLKKWSQEYYVQDRPSVEDDVYDSTYQELVSLETQYPNLIT
ADSPTQNVGGKLLPQFSKVNHHIPLLSLGDVFSKQELDDFTIRVEKNYPAVKQFNCELKI
DGLSISLRYENGVFVEGSTRGNGQIGEDITRNLKTIPSIPQKLTRPITIEVRGECYMPKK
SFAKLNEERERNGESGFANPRNAAAGSLRQLNPRITASRHLSTFMYNVADYNDLKTNTQS
GLLAELNDLGFNINPSYQVADNLDQINAYIDRYQQQRDGLDYGIDGIVIKVNDLKLQTKI
GATVKIPKWAIAYKFPPEEAETKLLDIEWTVGRTGVVTPTAVMEPVKLAGTIVSRASLHN
PDYLAEKGIRIGDTVKLHKAGDIIPEISQFIADKRPADAKPYQIPSECPSCGAPLVHLDD
EVALRCINPACPAQLTEQMTHFASRNAMDITGLGPRIVQQLFDHKLVSDVAGLYHLQIND
LLNLDKFGQKSAENLIDSINNSRSNSLERLLFGLGIRHVGAKAARLIAEHFQTMDRLMAA
DGESIATINSMGSVIADSITTYLSSKHAQELIAQLKSVGVNMTYIHADESGADNSFFNQK
RIVLTGKLEQMTRPKATAWLEDHGADVTSSVSKNTDLVIAGKDAGSKLVKAQELNVTVWD
EQRFISEING
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgctaaactttctgagcaagctgccaaacaaagaatcgatcaaatcaaaccgaaa
ttaaaaaaatggagtcaagagtactatgttcaagatcgtccgagcgttgaagatgatgtt
tatgattcgacctatcaagaattagtttcattagaaacgcagtatcccaatttaataaca
gctgattcgcctacgcaaaacgttggtggtaagttattaccccaattttccaaggttaac
catcatattccattactgtctctaggtgatgttttttcaaagcaggaattggatgatttt
acaattcgggtggagaaaaattatccagcagttaaacaatttaactgcgaactaaaaatt
gatggtctttcgatttcattacgttatgaaaatggtgtttttgtagaaggatctacccgt
ggaaacggtcaaattggagaagatatcactcgtaatttaaaaacgattccctcaatcccc
caaaagttgacccggccgattacgattgaagttcgtggcgaatgttatatgcccaaaaaa
tcattcgcaaaattgaatgaggaacgcgaacgaaacggggaaagtggatttgcaaaccct
agaaatgcagctgcggggagtctacggcaattaaacccacggatcacagctagtcggcac
ctaagtacttttatgtataatgtagccgactataatgacttaaagacgaatacacaaagt
gggttattagctgaacttaatgatttaggtttcaatattaaccccagttaccaagttgct
gataacttggatcaaattaatgcatatattgatcgatatcagcaacaacgtgatgggttg
gactatggaattgatggaattgtaattaaggtcaacgatctaaagctacaaactaaaatt
ggcgcgaccgttaagattcctaagtgggcaatcgcttataaatttcctcctgaagaggct
gaaactaagcttttggatattgaatggacagtgggccggacaggagtggttaccccaacc
gcagtgatggaaccggttaaattagctggaaccattgtttcacgggcttcacttcataat
ccagattacttagcagaaaagggcatccgaattggtgataccgtaaagctgcataaggct
ggtgatattattcctgaaatttcacagttcattgctgataaacgccccgctgatgctaag
ccgtatcaaatccctagtgaatgtccatcttgtggtgcaccactggttcatttagatgat
gaagtggcattgcgttgtattaatccagcttgtccagctcagttgacagagcaaatgact
cactttgcctctagaaatgcaatggacattactggattgggcccacggattgttcaacaa
ttatttgatcataaattggtcagcgatgtggccggactttatcacttgcaaattaatgat
ttattaaatttagataaatttgggcaaaaatctgctgaaaatttaattgattcaatcaat
aatagtcgtagtaactctttagaacgactattgtttggattggggattcgccatgttggt
gccaaagctgctcgattaattgctgagcattttcaaaccatggatagattaatggcagct
gatggtgaatcaattgcaaccattaattcaatgggatcggtaattgctgatagtatcact
acttatttgagtagcaaacatgctcaagaattgattgcccagttgaagtcagtaggggtc
aatatgacgtatatccatgctgatgaatcgggtgcagataattcattctttaatcaaaag
cgaatcgtactgaccggaaaacttgaacaaatgactagacctaaggcaactgcttggctc
gaagatcatggtgctgacgttactagcagtgtatctaaaaatactgacttggtaattgct
ggtaaggatgctggtagtaagttagtcaaggcacaggagttgaacgtgacggtttgggat
gaacaacgatttatttctgaaattaacggttag
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