Leptospira biflexa serovar Patoc Patoc 1 (Paris): LEPBI_I0217
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Entry
LEPBI_I0217 CDS
T00693
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbi
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Pathway
lbi03030
DNA replication
lbi03410
Base excision repair
lbi03420
Nucleotide excision repair
lbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LEPBI_I0217 (ligA)
03410 Base excision repair
LEPBI_I0217 (ligA)
03420 Nucleotide excision repair
LEPBI_I0217 (ligA)
03430 Mismatch repair
LEPBI_I0217 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbi03032
]
LEPBI_I0217 (ligA)
03400 DNA repair and recombination proteins [BR:
lbi03400
]
LEPBI_I0217 (ligA)
Enzymes [BR:
lbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LEPBI_I0217 (ligA)
DNA replication proteins [BR:
lbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LEPBI_I0217 (ligA)
DNA repair and recombination proteins [BR:
lbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LEPBI_I0217 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LEPBI_I0217 (ligA)
MMR (mismatch excision repair)
DNA ligase
LEPBI_I0217 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LEPBI_I0217 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_2
DUF4332
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ABZ96362
UniProt:
B0SKC1
LinkDB
All DBs
Position
I:complement(207283..209298)
Genome browser
AA seq
671 aa
AA seq
DB search
MAKKTKAEDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLAD
VSSPTAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSEWLEKTGIEENYSLEWKIDGAS
ILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEMNLTVRGEIFMTFADFEE
FNEEYGGKFANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSSRKGINTHKDILSLLK
KEKFPLAPDTTILTGKKLLREIESFRKKKDKMPFPVDGLVIKLDSLNLRESLGETSHSPR
WARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTYATLHNQDYINQLG
AGIGAKVLISKRGEIIPAVEKVTFPPKTIFVLPNQCPSCNTKLTKVDDSVDFFCTNRHCP
ERKLNQLIFFCSKKQMNIEGLGERQIQIFFEKGWVKDIPDLYTLEKYKPTLLELDGFGEK
SVKIIFDAIEKSKEKDFRFTLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTANED
LKAIHGIGPRTIEALLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTG
SFENFQPRDLAMDLITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFL
DLLKQEGIAID
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttggctaaaaaaacaaaagccgaggatcctaaaaaacgaatcattacacttcgtaaagaa
attggtcgtcataatgatttgtattacaaagaaaatgcacctgtcatcactgacaaagaa
tttgatatccttgtcaaagaactccaaaaactcgaaagtgaaaatccagatttagctgac
gtatcctctcccaccgcacaagtaggatctgacctaagcccccaatttagcaaattcaaa
cacaaagtacctgtattatccttagaaaacacatataacgaaaccgaactctcagagtgg
ttagaaaaaacggggatcgaagaaaactattccctggaatggaaaattgatggcgcctct
atcttgttatactacgaaaagggaaaactcaccaattgtgtgacaagaggttctggtgga
atcggtgatgtcgtcacagaaaacgtaaaaaccatttcaaccatcccacatactctttct
gaagagatgaacctgactgtccgcggagaaatttttatgaccttcgctgattttgaagaa
ttcaacgaagaatatggtggcaagtttgccaatcctaggaatttggcggcaggttcgatc
aaacaaaaagacccattagatgtcgccaaacgtccgttacgaatctatgtatatgatgtt
tatttttctagctctagaaaagggatcaatactcataaagacattttaagtttattaaaa
aaagaaaaattccctctcgcaccagatactacgatccttactggtaaaaaactcctaaga
gaaattgaatcctttcgcaaaaagaaagataaaatgccattccccgtcgatggacttgtc
atcaaattggattcgttgaacttacgagaaagtttgggtgaaacaagccattctccaagg
tgggcaagggcatttaaatttgatgccttactcaaggaatcaacgatcgaagaaattgat
tttgccattggtcgcacaggaaaagtcacgccacgtgccaaagtgactccgatttccctt
gcaggaaccacggtcacttacgccaccttacacaaccaagactatattaaccaactcggt
gccggcattggagcaaaagtactgatctccaaacgaggagaaatcattcctgccgtggaa
aaagtgacctttccaccaaaaacgatatttgtcctaccaaaccaatgtccatcgtgtaac
acaaagttaacgaaagtggacgattcagtggatttcttttgcacaaacaggcattgccca
gaacgaaagctcaaccaactcatctttttttgtagtaaaaaacagatgaacatcgaaggt
ctcggggaaaggcaaattcagattttttttgagaaaggttgggtcaaagacattcccgat
ttatatacattagaaaaatataaaccaaccttacttgagttagatggatttggtgaaaaa
tcagtcaaaatcatattcgatgccatagaaaaatccaaagaaaaagactttcgtttcaca
cttccttctatcggcctaaatgaagtaggccccaaagtcacagaaattctcattgaaaat
ggatatgattcctgggacaaactcctcaccctttccaaatccaaaacagcaaacgaagac
ctaaaagccattcatggaattggcccaagaaccatcgaagctttactcactcatctcaaa
gacaaagaaactttgaaattagtcgccacgctcaagaaactcggacttaaattccaagca
gacgaaaccgaaaaaagcgacttgcaaccgtttgttggtcaaagttggtgtgtcacagga
agttttgaaaacttccaacctcgtgaccttgccatggacctcattacgaaacatggtggc
aaaaaagtaacaagtgtttcctctaaaaccactcacttactctacggcccaggcgccggc
tccaaattggacaaggccacggaactgggtgtaaaacttgtcacggagtcagagtttttg
gatttattgaaacaggaagggatagcgattgattaa
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