KEGG   Leptolyngbya boryana: LBWT_25940
Entry
LBWT_25940        CDS       T04848                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lbo  Leptolyngbya boryana
Pathway
lbo03030  DNA replication
lbo03410  Base excision repair
lbo03420  Nucleotide excision repair
lbo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LBWT_25940
   03410 Base excision repair
    LBWT_25940
   03420 Nucleotide excision repair
    LBWT_25940
   03430 Mismatch repair
    LBWT_25940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lbo03032]
    LBWT_25940
   03400 DNA repair and recombination proteins [BR:lbo03400]
    LBWT_25940
Enzymes [BR:lbo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LBWT_25940
DNA replication proteins [BR:lbo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LBWT_25940
DNA repair and recombination proteins [BR:lbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LBWT_25940
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LBWT_25940
   MMR (mismatch excision repair)
    DNA ligase
     LBWT_25940
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LBWT_25940
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD SecDF_P1_head
Other DBs
NCBI-ProteinID: BAS56670
LinkDB
Position
complement(2785528..2787549)
AA seq 673 aa
MDSVAQLTPETQQRVQELRRLLQQASYDYYVLDAPTIEDSVYDQLYRELQTIEANYPELI
TPDSPTQRVGERPASHFTSVKHNIPLYSLENAFGNADLATWEQRWRKVAPDVTEFEYVCE
LKIDGNALALTYENGVLVRGATRGDGTTGEEITQNVRAIRSVPLRLNLDNPPPVVEVRGE
AFLSLDSFEQINRDREKAGESLFANPRNAAAGTLRQLDAKIVAQRRLDFFAYTLHVPGEL
ESQWQALELLREMGFRVNPEREKCADLQAVQDYCDRWSVDRTQLRYMTDGVVIKLNSFAL
QTRLGFTQKFPRWAIALKYPAEEAPTILENISVNVGRTGAITPVAELKPVQLAGTTVSRA
TLHNRDRIAELDCRIGDTVIVRKAGEIIPEVVRVLTELRPENARLFEMPTHCPECHEPVV
KPENEAVTRCINASCPAILRGALTHWASRDALDINGVGEKLVAQLVDQNLVNSVAGLYDL
TIENLLTLERMGKKSAEKIVKAIQDSKSQPWSRVLYGLGIRHVGSVNAQTLTQAFPSVEE
LAAATPEQISAVPGFGSEIAQSVSQWFQNHGNQELIDRLRQAEIQLKGEVVPVAQVETAI
SGKTFVITGTLPTLKRDEAQALIQKAGGKVTDSVSKKTDYLVAGEKAGSKLEKAQTLGVS
ILSEADLVQLIQG
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggattcagtcgcacagttgaccccggaaactcagcagcgtgtccaagaacttagacgc
ttgttacagcaggcaagttatgactattacgtgctagatgcgccgacgatcgaagattcg
gtctacgatcagctttaccgtgaactacaaacgatcgaggcgaactacccagaactgatt
accccggacagtccgacgcaacgagtcggagaacgccctgctagccatttcacttcagtc
aagcacaatattccactctacagcttagaaaatgccttcggaaatgccgacttagcgact
tgggaacagcgttggcggaaagttgcgcccgatgtgactgaatttgagtatgtctgcgaa
ctgaaaattgatggcaatgccttggcgctgacgtatgaaaatggggtgctggtgcggggg
gcaactcgtggagatgggacgaccggagaagaaattactcagaatgtgcgggcaattcgg
tctgtgccgctgcgcctgaatttagacaatccgccgcctgtggttgaagttcgaggtgag
gcatttctttctctcgactcgttcgagcagattaaccgcgatcgcgaaaaagccggagaa
tcacttttcgccaatccccgcaatgcggctgccggaaccttacgccagcttgatgctaaa
atcgtcgcccagcgtcggctcgatttctttgcttacacgctgcatgttccaggcgaatta
gagtcgcagtggcaggctttagaactcctaagagaaatgggattccgagtcaatccagaa
cgagaaaagtgtgctgatttacaagctgttcaggactattgcgatcgctggtcagtcgat
cgtactcaactccgctatatgacggatggagttgtgatcaaactcaattcgtttgccctg
caaactcgacttggatttacccagaaatttccacgttgggcgatcgcgctgaaatatccg
gcagaagaagctccgacaattttagaaaatattagtgtcaatgttggacgaacaggcgcg
attacacccgttgccgaactaaaacctgtgcaattagcaggtacaacagtatcgcgagca
accttgcataatcgcgatcgtattgccgaactcgattgtcgcattggcgatactgtgatt
gttcgcaaagcaggagaaattattcctgaagtcgtgcgagtcctgaccgaattgcgtcct
gagaatgcccgactgtttgaaatgccaactcattgcccggagtgccatgagccggttgtg
aaacccgaaaatgaagcggtaacgcgatgtattaatgcttcttgtcctgcgatcttacgc
ggtgcattaacgcactgggcaagccgtgacgcattagatatcaacggcgtaggcgagaaa
ttagtggctcaactcgtggatcaaaatctcgtgaattctgttgcgggactgtacgattta
acgatcgagaaccttctgacgctagagcgcatgggcaaaaaatccgccgagaagattgtc
aaagcaatccaagattctaaatctcagccctggtcacgagtgttgtacgggttaggcatt
cggcatgttggcagtgtgaatgctcaaactctaacccaggcgtttccaagtgttgaagaa
ttagcagcagcaacacctgagcagatttcagccgtgccaggatttggatctgagattgcc
caatcggtctcgcagtggtttcagaatcatggcaaccaggaactcatcgatcgcttacgc
caagctgaaattcaactcaaaggcgaagttgtgccagttgctcaagttgagaccgcaatt
tcaggaaaaacctttgtgattactggaacattgccgactctgaagcgggatgaagcacaa
gccttgattcagaaagcaggcggtaaagtaacggattctgtgagtaagaagacagattac
ttagttgctggagagaaggcaggctcgaaactggaaaaggcgcaaacgttaggagtctca
atcctttcggaagcggatctagttcaactcatccaggggtaa

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