Lachnospiraceae bacterium JLR.KK008: V1224_10050
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Entry
V1224_10050 CDS
T10585
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp03030
DNA replication
lbp03410
Base excision repair
lbp03420
Nucleotide excision repair
lbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1224_10050 (ligA)
03410 Base excision repair
V1224_10050 (ligA)
03420 Nucleotide excision repair
V1224_10050 (ligA)
03430 Mismatch repair
V1224_10050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbp03032
]
V1224_10050 (ligA)
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_10050 (ligA)
Enzymes [BR:
lbp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V1224_10050 (ligA)
DNA replication proteins [BR:
lbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V1224_10050 (ligA)
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V1224_10050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V1224_10050 (ligA)
MMR (mismatch excision repair)
DNA ligase
V1224_10050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V1224_10050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Lar_restr_allev
Nlig-Ia
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WWR17458
LinkDB
All DBs
Position
complement(1987960..1989933)
Genome browser
AA seq
657 aa
AA seq
DB search
MKELAQRLTEASRAYYAQDREIMSNYEYDALYERLEQLEQSTGIVLAGSPTVQIGYEAVE
ELPKERHERPMLSLGKTKSREELRDFLKGHEGILSWKLDGLTVVLHYHDGKLAKAVTRGN
GEIGEIVTGNARVFRNIPLQITCRGELTLRGEAVITYSDFKKINETIGDADARYKNPRNL
CSGSVRQLNNEVTAARNVRFYAFSLVKADGVEFENSREKQLLFLREQGFDVVGYRRVSED
NIMEAVAWFEREIRTFDVPSDGLVLSLDDLEYGRSLGTTAKFPRDSIAFKWADEQAETTL
REVEWSASRTGLINPVAIFEPVELEGTTVSRASVHNVSILKALKLGTGDRITVYKANMII
PQIADNLTGSGTIEPPAACPVCGGPTQIQKTNEVESLYCVNPDCDAKKIKSFTLFVSRDA
MNIDGLSEATLEKFIARGFVHHYADIFHLDDHHEEIVELDGFGEKSYQNLLSGIETARHT
TLPRLIYSLGIANIGIANAKMLCREFDYDLERMMNADVDQLSETDGVGEVIAAAFFQYFQ
QEKNRRELRLLLPELDIVVEQVDESSLTLKGNVFVVTGSLQLFENRNALKEEIERRGGKV
TGSVTSKTTALINNDTASNSSKNKKAKELGIPILSEEAFAGQYLQNGEAGREKEKKE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaactggcacagcgtctgacggaagcctccagagcgtattatgcacaggatcgg
gagattatgagcaattatgaatatgacgctctctatgagcggctggaacagctcgaacag
agcactggtattgtgctggctggcagtccgactgtgcagataggctatgaggcggtggaa
gagctgcccaaggaacgacatgagagaccgatgctgtcgctcggtaagacaaagagccgg
gaagagctgcgtgattttctcaaaggtcatgaggggatcctcagctggaagctggacgga
ctgacagtcgtgcttcactatcatgacggaaaacttgcaaaagcagttacccgcgggaat
ggtgagattggcgaaattgtcacaggcaacgcccgtgttttccgcaatattccgcttcag
attacctgtcggggagaactgaccctgcggggggaagcggtgatcacttattcggatttt
aaaaaaataaatgaaacgatcggagatgccgatgccagatataagaatccccgcaatctt
tgcagcggatcggtgagacagcttaacaatgaggtgacagcagcccggaatgtgcgtttc
tatgcgttttctctcgtgaaggcagatggggtggagtttgaaaactcccgggagaagcag
ctcttatttttgagagagcaggggtttgacgtcgtgggttatcgacgggtatcggaagac
aatattatggaggccgtggcatggtttgagagggagatccggacgtttgacgtgccatcc
gacgggcttgtactctctttggatgatctggaatacggccgctcgctcgggacgacggct
aaatttccgcgggactcgattgcctttaagtgggcggatgagcaggcggagacgacattg
cgggaagtggagtggagtgccagccgtaccggtctgatcaatcctgtggcgatttttgaa
ccggtggaactggaaggaacgacggtcagccgcgcatccgtgcataatgtgagtatttta
aaggcgctgaagctgggaacaggcgatcggatcacagtatacaaggccaatatgatcatt
ccgcagatcgcggataatctcacgggaagcggcacgatcgaaccgcctgccgcctgtcct
gtgtgcggcggaccgacacagatacaaaagacaaatgaagtggaatctctgtattgtgtt
aatccggactgtgacgccaaaaagatcaaatcgttcacactgtttgtcagcagagatgcc
atgaatattgacggtctgtcggaggcgacactggagaagtttattgcgcgcggatttgtc
caccattacgcagatatttttcatctggacgaccatcatgaagagatcgtggaactggac
ggctttggagaaaaatcatatcaaaatctgctgtcgggcattgagacagccaggcatacg
acgcttccaaggctgatctacagtcttggcattgctaacatcggcatagccaatgctaaa
atgctctgccgggaatttgactatgatctggagcgcatgatgaatgcagatgtggatcag
ttgagtgagacagacggggttggcgaagtgattgccgccgcttttttccaatattttcag
caggagaaaaaccgcagagagctgaggctgcttctcccggaactggacattgtggtggaa
caggtcgatgagagcagcctgacactgaaaggaaatgttttcgtcgtgactggcagttta
cagctttttgaaaaccggaatgcactcaaggaagagatcgagcgaaggggcggtaaggtg
acaggaagtgtgacatcgaagacgaccgcgctgatcaacaacgacactgcctccaattct
tccaaaaacaaaaaagcgaaagagctggggattcccattctttcggaggaagcgtttgcg
gggcaatatctgcaaaacggggaagcaggcagagaaaaagaaaagaaggagtga
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