Lactiplantibacillus brownii: MH1LPH_09060
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Entry
MH1LPH_09060 CDS
T10750
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbs Lactiplantibacillus brownii
Pathway
lbs03030
DNA replication
lbs03410
Base excision repair
lbs03420
Nucleotide excision repair
lbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MH1LPH_09060 (ligA)
03410 Base excision repair
MH1LPH_09060 (ligA)
03420 Nucleotide excision repair
MH1LPH_09060 (ligA)
03430 Mismatch repair
MH1LPH_09060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbs03032
]
MH1LPH_09060 (ligA)
03400 DNA repair and recombination proteins [BR:
lbs03400
]
MH1LPH_09060 (ligA)
Enzymes [BR:
lbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MH1LPH_09060 (ligA)
DNA replication proteins [BR:
lbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MH1LPH_09060 (ligA)
DNA repair and recombination proteins [BR:
lbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MH1LPH_09060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MH1LPH_09060 (ligA)
MMR (mismatch excision repair)
DNA ligase
MH1LPH_09060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MH1LPH_09060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Zn_ribbon_NUD
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BDZ30440
LinkDB
All DBs
Position
1043360..1045402
Genome browser
AA seq
680 aa
AA seq
DB search
MAKQPIESLNATTAATEAADLRVELNQWRQDYYDNDAPKVEDDVYDREYARLVALETAFP
TIVTPDSPTQLVGGTVKAGFTKVQHPIPMLSLGDVFSQGELQEFDERLRQNVDEPFDYNC
ELKIDGLALSLRYENGRLIQGSTRGNGTIGEDITKNIMTIASIPHQLKRPLTVEVRGECY
MPKAAFADLNARREAAGEPVFANPRNAAAGSLRQLDTKVTAERQLSTFMYNVADYAPLTA
RTQSDMLTEFADLGLTINPDFKVAHSMTEVFDYIDHYQHERPDLAYGIDGIVIKANPLPL
QRSLGATVKVPRWAIAFKFPPDEQPTLLEDVEWTVGRTGVVTPTAVMTPVQLAGTTVARA
SLHNPDYVQAKDVRIGDTVLLHKAGDIIPEIASVDLSKRPKDAEPLPIPTHCPSCGAPLV
HLEDEVALRCLNPKCPAQVQEGLVHFASRNAMNIDGLGPKLIAQLYTSQLVTDVADLYRL
TKSQLLELDKVKDKSAENLLTAIDRSRNNSLERLLFGLGIRHVGAKVARLIAQHFGRIEP
LMAADQAEIAAIDSMGDIIANAVVQYFDSADVQALIKELQAVHVNTTYQGPSETATQTSD
SWFAGKRVVLTGKLQRFTRPAATEWLENHGATVTGSVSKKTDLVVAGADAGSKLQKAQQL
DITVWDEDRFSTTMREDAEA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaacccattgagtctttaaatgccactacggcggcgactgaagctgcggat
ctgcgggttgagttgaaccaatggcggcaagattattatgataatgacgcgccgaaagtt
gaagatgatgtttatgatcgtgaatatgcccgtttggtcgctttagagacggcttttcca
accattgtgacgccagattcaccgacacaactggtcgggggaacggtcaaagctggtttc
acgaaagttcagcatccgattccaatgttgtcacttggtgatgtcttttcacaaggtgaa
ttgcaagaatttgatgagcggttacgtcaaaatgttgatgaaccgtttgattataattgt
gaattaaaaattgatggtttagcgctttcattacgctatgaaaatgggcgcttgattcaa
gggtcgacgcgaggaaatgggacgatcggcgaagatattactaaaaatattatgacgatt
gcctcaattccacatcaattgaagcggccactgaccgtggaagttcgcggagagtgttat
atgcctaaagcagcgtttgctgacctgaacgctcgtcgtgaggccgccggagaacctgtt
ttcgccaatccgcgtaatgcggctgctggctcgttacgccaattggacaccaaggtgact
gcggaacggcaattgagtacatttatgtacaacgttgccgattacgcgccattgactgcc
cggacgcaaagcgacatgttgacggaatttgctgacttaggcctaactattaatcccgat
ttcaaagtggctcactcgatgacggaagttttcgattatattgatcattatcagcatgaa
cggccagatttggcctatgggattgatgggattgttatcaaagccaatccgttaccttta
cagcggtcattaggggctactgtgaaagtgccgcggtgggcgattgcttttaagtttcca
ccagatgaacagccaactttgcttgaagatgtcgaatggacggtggggcgtaccggggta
gtgacacctactgcggtgatgacaccggtccaactcgctgggacgacggtggctcgcgcc
tcattgcataatccagattatgttcaagctaaggatgtgcgcattggggatacggtgtta
ctgcataaggccggtgacattattccggaaattgcctcagttgatttgagcaaacggccc
aaagatgcggaaccattaccgattccaactcattgtccttcttgtggcgcaccattggtc
catttggaagatgaagtggcacttcgttgtcttaatccgaagtgtcccgcccaagttcaa
gaaggtttggtgcacttcgcctcacggaatgccatgaatattgatgggttagggccgaag
ttgatcgcccaattgtatacgagtcaactagtgacggatgttgccgatctatatcggtta
accaagtcgcaattactcgaattagataaagtaaaagataaatctgccgaaaatctcttg
acagcgattgaccgtagtcgcaataattcacttgaacgattattgttcggtctcgggatt
cgacatgtgggcgcgaaggttgcgcggttgattgcgcaacattttggtcgtatcgaaccg
ttgatggcagcggatcaggctgaaatcgcggcgattgattccatgggcgatatcattgcg
aatgcggtggtacagtattttgacagcgcggatgtgcaagcgttgatcaaagaattgcaa
gccgtccacgtgaacaccacttatcaaggaccgagcgaaacggccacgcagacgagtgac
agctggtttgctggcaaacgagttgttttaacaggtaagctccagcgctttacgcgacca
gcggcaaccgaatggctcgaaaatcatggcgccacagtgactgggagtgtgtctaaaaag
acagatctcgtggttgcgggcgccgatgctgggagtaagttgcaaaaggcacaacagttg
gacattaccgtctgggatgaagaccggttcagcacgactatgagggaggatgcagaagcg
tga
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