Loigolactobacillus backii: AYR52_07530
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Entry
AYR52_07530 CDS
T04754
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbt
Loigolactobacillus backii
Pathway
lbt03030
DNA replication
lbt03410
Base excision repair
lbt03420
Nucleotide excision repair
lbt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYR52_07530 (ligA)
03410 Base excision repair
AYR52_07530 (ligA)
03420 Nucleotide excision repair
AYR52_07530 (ligA)
03430 Mismatch repair
AYR52_07530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbt03032
]
AYR52_07530 (ligA)
03400 DNA repair and recombination proteins [BR:
lbt03400
]
AYR52_07530 (ligA)
Enzymes [BR:
lbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AYR52_07530 (ligA)
DNA replication proteins [BR:
lbt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYR52_07530 (ligA)
DNA repair and recombination proteins [BR:
lbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AYR52_07530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYR52_07530 (ligA)
MMR (mismatch excision repair)
DNA ligase
AYR52_07530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYR52_07530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Relaxase_C
dCache_3
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ANK60120
LinkDB
All DBs
Position
complement(1612247..1614277)
Genome browser
AA seq
676 aa
AA seq
DB search
MALIKPISQYSEQEASDAAVELRTTLNDWSRAYYTADKPVVEDHVYDENYRDLQTLENEF
PSIITPDSPTQRVGGQVLPGFNKVAHDSPMLSMGDVFSKTELADFDRRLRKAYPTDFDYN
VELKIDGLAISLIYEDGIFVRGATRGNGTIGEDITQNLKTISSIPLRLTKPVSIEVRGEC
YMPKKAFADLNARREANGEENFANPRNAAAGSLRQLDSRVAASRQLSTWLYTLTTFDDLE
VTTQAEALKTLAELGFKVNSNYHVCHTMDEVSQYIDQYQKQRDELDYGIDGIVLKVNDLA
LQRQMGNTVKVPRWEIAYKFPPEEAQTVIHQIEWTVGRTGVVTPTAVMDPVQLAGTTVAR
ATLHNGDLIKEKDIREDDTVLIHKAGDIIPEVSEVILSLRPEMSKPYQLPTTCPSCGKPL
QHLDEEVALRCINPMCPAQIQEQLTHFASRNAMNIDGLGPQIIQQLYTKGLVHDVADLYH
LTYEQLIALDKFQDKSATNLLNAIVASKQNSLERLINGLGIRHVGAKMARLLAEHFETMA
KLQQSDQEELSAIDTSGTIIANSVYTYFQTKEAQELIKQLIAAGVNMTYLGPKKVAQDTV
FSGKTVVLTGTLENYKRSALATQLEDLGAKVTGSVSKKTDLVIAGSDPGSKYTKAQNLGI
TIWDEATLAENLKAAQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaattaaaccaattagtcagtattcagaacaagaggcaagtgatgcagcagtt
gagctgcgaaccactttaaacgattggagtcgtgcgtattatacggcggacaaaccagtt
gttgaagatcacgtttatgatgaaaattaccgtgatttgcaaacgctagaaaatgaattt
ccatccattattacgccagactcaccaacgcagcgggttggcggtcaggttttacccggc
tttaataaggttgcccatgatagcccgatgctttcaatgggggatgtcttttctaaaacc
gagttagctgattttgatcgccgacttagaaaggcctacccaacagattttgattataac
gttgagttaaaaattgatggtttggccatttcgttgatttacgaggatggtatttttgtt
cgtggcgcgacacgcggtaatggaacgattggcgaagatatcacgcagaatttaaaaaca
atttcatcaattccgttacgactaactaagcccgtttctattgaggttcgcggcgaatgt
tacatgcccaaaaaggcttttgctgatttaaatgcccggcgggaagctaatggtgaagaa
aattttgctaacccacgtaatgcggcagctggcagtcttcgccagttggactcccgggtg
gccgccagtcgccagttgtccacctggctgtacaccctaacgacatttgatgatctggaa
gtgacaacgcaagcagaggcattgaaaactttggccgagctaggttttaaagttaattcc
aattaccatgtttgccacacgatggatgaagtttctcaatacattgatcagtaccaaaaa
caacgtgatgagcttgattacggcattgatggaattgtcttaaaggtaaatgatttggcc
ttgcaacgccaaatgggaaatacagttaaggttccgcgttgggaaattgcttataaattt
ccaccagaagaggcgcaaaccgttattcaccaaattgaatggacggttggccgaacgggc
gttgtgactccgaccgcagttatggacccggttcaattagcggggacaactgtcgcgcga
gcgaccctgcataatggtgacttaattaaggaaaaggatatccgtgaagatgatactgtt
ctgattcataaggcgggtgacattattcctgaagtttcggaagttatccttagcttacgg
ccagaaatgagcaaaccgtatcagctcccaacgacttgtccttcatgtggtaagccgtta
cagcatttggatgaggaagttgccttgcgctgcattaatccaatgtgccctgctcaaatt
caagaacaattaacccattttgcgtcacgtaacgccatgaatattgatggcttaggaccg
caaattattcaacaattgtacactaaaggacttgttcatgacgttgccgacttgtatcat
ttaacttatgaacaattgattgctttggataagtttcaggataaatcggccactaatttg
ttaaatgcaattgttgcaagcaaacaaaactcacttgagcgtttaattaatggcctggga
attcgccacgttggggccaaaatggcgcgcctattggctgagcattttgaaacgatggct
aaattacaacaaagtgatcaagaagaattaagcgccattgacacatccggtacaattatt
gccaacagtgtttacacttattttcagacaaaagaggcgcaggaactgattaaacaattg
attgccgcaggcgtcaacatgacttatctcggaccaaagaaggttgcgcaagatactgtg
tttagtggtaagacagttgtcttgaccggaacacttgaaaattataagcgttcggcgtta
gcaacacagcttgaagatctgggtgctaaagttaccggaagtgtgtccaaaaaaactgat
ttggtaattgccgggagtgatcctggtagcaaatataccaaggcgcaaaacctggggatt
acaatctgggatgaagcaactttggctgaaaatttaaaggccgcgcaataa
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