Lentisphaerota bacterium zth2: JYG24_13440
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Entry
JYG24_13440 CDS
T10935
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lbv Lentisphaerota bacterium zth2
Pathway
lbv03030
DNA replication
lbv03410
Base excision repair
lbv03420
Nucleotide excision repair
lbv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYG24_13440
03410 Base excision repair
JYG24_13440
03420 Nucleotide excision repair
JYG24_13440
03430 Mismatch repair
JYG24_13440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbv03032
]
JYG24_13440
03400 DNA repair and recombination proteins [BR:
lbv03400
]
JYG24_13440
Enzymes [BR:
lbv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYG24_13440
DNA replication proteins [BR:
lbv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYG24_13440
DNA repair and recombination proteins [BR:
lbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYG24_13440
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYG24_13440
MMR (mismatch excision repair)
DNA ligase
JYG24_13440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYG24_13440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
PTCB-BRCT
HHH_2
BRCT
DNA_ligase_ZBD
DUF5003
Motif
Other DBs
NCBI-ProteinID:
QSH41242
LinkDB
All DBs
Position
complement(3158303..3160321)
Genome browser
AA seq
672 aa
AA seq
DB search
MVDKINFVIAELNEKQLVELIKYHNQRYWSEGEPEISDERYDELIRALQAINPDHQLVTA
VLAPQVAGSGKITHEKPMLSLDKAYSFEDVFEWAGKNCRSEDELYLIQPKYDGISANYQK
GILATRGDGEQGENITDKLPLIELESTGYTGPVNQSVRGEIVIRDDDFRNLYSKIKRKGG
GTYKNSRNAVAGIMGLKDITDMLRQHAKLTLVDYEMISFEVKYRALPDKWAKIAEEIEQL
PYPMDGIVIKLKDEKYSESLGSTAHHPRGQIAFKFSGIRKESKLLKVDWSFGKNCLTPVA
EIDPVDIGGITIRHASLHNAQNIIDKDIRIGDRVVVERAGDVIPYIVSALPGPAHTAAEN
NPMITKCPNCESELVRSGPELRCPNPECSETRLKRLTAAVKNIGIERLGEPNIRRMMATL
GVMTLKDIFDLKLMDILQLEGFKSKSANNLFSEISTARTTTDFQVLAALNIPNIGPNVAK
MILNEYTLAELRELPEEVMAEINGVGPERAGALRRELKEQSEFLDELLSALDVKQTKGEA
AAATICFTGKMPEKRSYYEKIASEHGYEPVDHVNKELSLLVAMNPDANGGKLKKARSAGV
KIMGLENWLQAVKNGNTTAQQPPEETEPEKPETSEPPADDLFSSSFSSEEPKPEKKASSS
EIDDDGQIKFGF
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggttgataagataaattttgttattgccgaattaaatgaaaaacagctggttgagttg
attaaataccacaatcagcgctactggagcgagggcgaaccggaaataagcgacgaacgc
tatgatgaacttatccgcgccctgcaagccataaatccggaccaccagctggttacagca
gttctggctccacaagtagccggttctggcaagataacccatgaaaaaccaatgctgtca
cttgataaagcttactcgtttgaagatgtctttgaatgggctggaaaaaactgccgcagc
gaggatgagttatatcttattcagccaaaatacgatggtatttccgctaactaccaaaaa
ggaatactggcaacacgcggcgatggagagcaaggggagaatatcaccgacaagctccca
ttgatagaacttgaatcaaccggatataccgggcctgtaaaccagtcggtaagaggtgaa
atcgtaatccgcgacgacgatttcagaaacctttactcaaagattaagcgtaaaggcggc
ggaacttataaaaactcgcgtaacgcggttgccggcattatggggcttaaagatattaca
gacatgctgcgccagcacgccaaactgacgctggttgattatgaaatgatctcctttgag
gtaaaataccgtgcattgcctgacaaatgggctaaaatcgctgaagaaatcgagcagctg
ccttatcccatggacggaattgtaattaaacttaaagatgaaaaatacagtgaatcgcta
ggcagtactgctcatcatccgcgaggtcagatagcatttaaattcagcggcatccgcaag
gaaagcaagctgttgaaagtagactggagttttggcaaaaactgtcttaccccggttgcg
gaaatcgaccccgttgatattggcggcataactatccggcatgcttcgttgcataacgcc
cagaacattattgacaaagacattcgcattggagaccgggttgttgtcgaacgggccggc
gatgtaatcccttatattgtcagcgccctgcccggacctgctcatactgccgccgaaaac
aacccgatgataacaaaatgcccgaactgtgagagtgaactcgttcgcagtgggccggaa
ctgcgctgtccgaacccggaatgctcagaaacccggctgaaacgcctgaccgctgctgtc
aaaaacattggaatagaacgtctgggagaacctaacatccgccgcatgatggccaccctg
ggagtaatgactctgaaggacatctttgaccttaaacttatggatatcctgcagctggaa
ggatttaaaagcaaatctgcgaacaacctgttcagtgagatatcaactgcccgcaccacc
accgattttcaggttctggctgcgttgaatattccaaatatcggccccaatgttgctaaa
atgattctgaatgaatatactctggctgagctccgcgaattgccggaagaggtcatggct
gaaattaacggagtcggtcctgaacgggccggcgctttacgtcgtgagctcaaagaacaa
agcgaattcctggatgaactgctttcagctctggatgtaaaacagacaaaaggcgaagca
gcagcggcaacaatctgttttactggaaaaatgccggaaaaacgatcctattatgaaaaa
attgcttcagaacacggttatgagccggttgatcacgtcaataaggaactctcgctgctg
gttgccatgaatccggacgctaacggcggcaagctgaaaaaagccaggtccgccggcgta
aaaatcatgggacttgagaactggctgcaggcagtaaaaaacggcaatacaaccgcacag
caacctcctgaagaaactgagccggaaaaacctgaaacttctgaaccgcctgctgacgat
ttgttcagttccagtttctcatccgaggaacctaagcccgaaaagaaagcgtcatcctca
gaaattgacgatgacggacagattaagtttggattttaa
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