Leadbetterella byssophila: Lbys_3053
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Entry
Lbys_3053 CDS
T01350
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lby
Leadbetterella byssophila
Pathway
lby03030
DNA replication
lby03410
Base excision repair
lby03420
Nucleotide excision repair
lby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lbys_3053
03410 Base excision repair
Lbys_3053
03420 Nucleotide excision repair
Lbys_3053
03430 Mismatch repair
Lbys_3053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lby03032
]
Lbys_3053
03400 DNA repair and recombination proteins [BR:
lby03400
]
Lbys_3053
Enzymes [BR:
lby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Lbys_3053
DNA replication proteins [BR:
lby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Lbys_3053
DNA repair and recombination proteins [BR:
lby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Lbys_3053
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lbys_3053
MMR (mismatch excision repair)
DNA ligase
Lbys_3053
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lbys_3053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
5_3_exonuc
Dynactin_p22
Motif
Other DBs
NCBI-ProteinID:
ADQ18715
UniProt:
E4RU07
LinkDB
All DBs
Position
3446430..3448472
Genome browser
AA seq
680 aa
AA seq
DB search
MDIKTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEFRQPDSPTQR
VGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGLEGEPYEYICELKFDGISLS
IRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGFMPTKV
FEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERFTTHEES
FLALQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQREKLGF
TAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRATLHNAD
EIERLGLAIGDEVFVEKAGEIIPKVTGVAVQSLARIPIVFPTACPSCGTSLLRNEGEAAW
YCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKIDILLENGLIRDAADLYQLKYEDLIG
LEKVHVDEETGKSKKISFKEKTVKNILEGIAKSKEEPLAKLLFGIGIRFVGETTAQKLAA
HFKSMQGLMNANYEELLAVPDVGEKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEV
VTEGNALEGLSLLYTGTFENFSREELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLK
KAEELGIPILNEEQFLAKLS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaaaacccgcattcagacgctgactgaccagataaatcattacaatgatcgc
tattacttagatgctgtttctgagattagtgattttgagtttgatactttacttaaggaa
ctggaagagttagagaaggcccatcctgaatttcgtcagcctgacagtcccacacagcgg
gtaggaggaagtattactcggaatttcgaaaccgtacgccaccaatttcccatgctctct
ttgtctaacacctatagtgaagaggagatacgcgactgggatgcaagggtcaaaaaaggc
ttagagggtgaaccttatgaatatatatgcgaattgaaattcgatgggatatccctttct
atccgctatgaaaacggtattctgactaaagggataactagaggtgatggtgtgcaaggt
gacgatattacagccaatgtcaagactatacgttcattgcctctgaatgtgcggaaattc
gaagaggtcttaggcgaaaactttgaagtaaggggagaagggtttatgcccaccaaggtc
ttcgaagctctaaacaaagagaaggaaatcagaggggaagctttgctggccaaccctaga
aatgccgctgcaggtacatttaaattacaggactcttccgtggttgctagtaggaagcta
gattgttttgtttaccaattcatctcaggagaggaacgttttactactcacgaggaaagt
tttctggctttgcagtcggccggattcaaggtctctaattcctggaagaaggtttcaaac
attgaaggggttatgtcattcatacatgagtgggatgagaaaaggcatactctggaatgt
gcaactgatggcatcgtcataaaggttaacagctatgcccagagggaaaaattgggattt
acggcaaaaagtccgcgctgggccattgcttacaaatataaggcagagtctaagtccact
accttattagacgttacttttcaggtaggaagaactggaaccgttactccggtagcggaa
ttgaggccggtgaacctttccatgactacagtgaagagggcaacactccataatgcagat
gagattgaaaggttaggtctggctataggagatgaagtttttgtagaaaaggcgggggag
attatccctaaggtgaccggagtggctgtacagagtctggcaagaattcctatcgtgttt
cctactgcttgtccttcttgcggcacttctttattaagaaacgaaggtgaggcagcatgg
tattgcccgaattctgaaggctgcctgcctcaaatcaaaggttctatagaacattttatc
caaaggaaggcccttgatatagaaagcctaggtgaaggcaaaattgatatattgctggaa
aatggcttgattcgtgatgccgctgatctctaccaattaaaatatgaggatttaataggt
ttagaaaaggttcatgtggatgaagagacggggaagtccaagaagatcagttttaaagaa
aaaactgtcaagaatattctggaaggtattgccaaatccaaagaagaacctttggctaaa
cttcttttcggtataggtatacgttttgtgggagaaacaacggcccagaaattagctgct
cactttaaaagtatgcaagggctgatgaacgcgaattacgaagagcttttagcggttccg
gatgtaggggagaaggtggctcaaagtataagagattatttccaatctgaaagtaaacaa
cactttatagctaagctgcaagttgcgggattgcaaatggaagccgtgcacgaagaagtg
gtgacagagggaaacgcattagaggggctcagtctattatataccggcacttttgaaaac
tttagcagggaagagttagaacgtaagattgaagctaacgggggtaaattagttagcgga
gtgtccaaaaagctaagttacctcatagtaggtgaaggggcaggtccgtctaaattgaaa
aaggctgaagagctaggtatacctattctaaacgaggagcaatttttggcaaaactttct
tga
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integrated database retrieval system
