Lacticaseibacillus paracasei ATCC 334: LSEI_1055
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Entry
LSEI_1055 CDS
T00407
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03030
DNA replication
lca03410
Base excision repair
lca03420
Nucleotide excision repair
lca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSEI_1055
03410 Base excision repair
LSEI_1055
03420 Nucleotide excision repair
LSEI_1055
03430 Mismatch repair
LSEI_1055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lca03032
]
LSEI_1055
03400 DNA repair and recombination proteins [BR:
lca03400
]
LSEI_1055
Enzymes [BR:
lca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LSEI_1055
DNA replication proteins [BR:
lca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LSEI_1055
DNA repair and recombination proteins [BR:
lca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LSEI_1055
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSEI_1055
MMR (mismatch excision repair)
DNA ligase
LSEI_1055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSEI_1055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
5_3_exonuc
HHH
Motif
Other DBs
NCBI-ProteinID:
ABJ69849
UniProt:
Q03AC3
LinkDB
All DBs
Position
1037313..1039337
Genome browser
AA seq
674 aa
AA seq
DB search
MLAKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYP
KLVTPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVGHPVDYNV
ELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLSLEVRGECY
MPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEPEQFNV
TTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTPPAPIPEVCPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIVAQLQAKHLVKDVADLYHL
TAADLAKLDKFKEKSINNLLSAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGDLDH
LMTASQEAIADVPNIGPTIGEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSF
VAGKTVVITGKFAEFSRPALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNV
PIMNETELLANLKD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttagcaaaaccagctgcacaattcacacttgaagaagctcaggcggaagtcgaaaag
cttcggaagcaactgaatcaatggcgtcttgagtattacaccaaggatgcgccaactgtg
accgataacgtctatgacgatcattatcgcgatttacaggcactcgaggaggcttatccc
aagctagtcacgcctgattcgccaactcaagaagtcggcgatgtcattaattcggacttt
gccaaggtgcaacacccaattccgatgttgtcgatgggcgatgttttttcgttcgaagag
ctgagtgaatgggatgctcgcatgcaaagtaatgtcggccatccggtggattacaatgtt
gagttgaaaatcgacgggttggctttatctctgatttatgaaaacggcaaactcgttcaa
ggctcaacacgtggtgatggtaatgtcggtgaagatgtgaccagaaatgtgttgaccatt
gcgtcagttcccaagcagttaaagcagccactttcactcgaggtacggggtgaatgttat
atgcctaaggcggcgtttgccaagctgaatgcgcggcaggaaactgagggcggcacgcct
tttgccaatccacgtaacgcggcagctggatcactccgacagttagatgccaaagtcacc
gctgctcgagagctggataccttcatttatacgttaattgaaccagagcagtttaacgtg
accacacagcatgaggcgattgcgtttatgcaggcacttggatttacaacaaatccaagt
tcagaagtggctggtgacatgcaggcgattgacacctacattaagaagtacaccaccgac
cgtgatgcgttgccttacggaattgatgggatcgttttgaaagtgaacgatttagcgctg
caagcgcaactaggtaacaccgttaaagtgccacgctgggaaattgcctacaaattccca
cctgaagaagcagagaccgtcattcatgacattgtctggacagttggtcgaaccggtgtg
gtcacgccgactgcagtgatggaccccgttcagcttgctggaaccacagtggcacgtgcc
acgttgcacaacgcggatatgattcgtgataaagatattcgcatcggcgacaccgtcatg
ttgcacaaagcaggcgacattattcctgaagtttcgcgggtactggttgctaaacgtcca
gcggatacgccaccggcgccgattccagaggtctgcccgtcatgtggccaaaaactggtc
catctcgacgatgaagtagctttgcgttgcatcaacccgatgtgtccggcacaggtccaa
gagcagctcacccattttgcgtctcgcaacgcgatgaatatcgatggcttaggcccgaag
attgtggcacagttgcaggccaaacatctggtaaaagatgtcgctgatttgtatcacctc
acagctgcggatctggcgaaattagataagtttaaagaaaaatcaattaataatttgtta
agtgcgatcaacaacagtcggcaaaactcggtagaacgcctaatctttgggttgggcatt
cggcacgttggcggtaaagccgcacgaattctggccgagcatttcggcgatttggatcat
ctgatgaccgccagtcaagaggcgatcgcagatgtgccaaatatcgggccgaccattggg
gaagcgatcgtgacgtattttaaagccgcaacggttcaaaagttgatcactcagttgcgc
gaagctgatgttaacctgcgttacaccggaccgaccaaaccagtggtcaaagatagtttt
gttgcaggtaaaaccgttgtgattaccggtaagtttgccgagttttcgcggccagcactc
acgaagcagctagaaggattaggagccaaggtcacaggttcggtttcaaagaaaacggac
atcctgatcgctggcgacgcggctggcagtaagttggcaaaggcacaaagcttgaatgtc
ccaatcatgaatgagacggaattgctggcgaatttgaaggattga
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