Legionella cardiaca: PXX05_07695
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Entry
PXX05_07695 CDS
T08869
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcad
Legionella cardiaca
Pathway
lcad03030
DNA replication
lcad03410
Base excision repair
lcad03420
Nucleotide excision repair
lcad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PXX05_07695 (ligA)
03410 Base excision repair
PXX05_07695 (ligA)
03420 Nucleotide excision repair
PXX05_07695 (ligA)
03430 Mismatch repair
PXX05_07695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcad03032
]
PXX05_07695 (ligA)
03400 DNA repair and recombination proteins [BR:
lcad03400
]
PXX05_07695 (ligA)
Enzymes [BR:
lcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PXX05_07695 (ligA)
DNA replication proteins [BR:
lcad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PXX05_07695 (ligA)
DNA repair and recombination proteins [BR:
lcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PXX05_07695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PXX05_07695 (ligA)
MMR (mismatch excision repair)
DNA ligase
PXX05_07695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PXX05_07695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WED41819
LinkDB
All DBs
Position
complement(1801604..1803619)
Genome browser
AA seq
671 aa
AA seq
DB search
MSQDIILMKINELRERIRLYDHHYYVLDAPLVPDIEYDRCFKELQKLESENPHYITPDSP
TQRVGVSPAGAFEEIVHLKPMLSLANVFSTEELNAFMKRIADRLDNKEELLFTCEPKLDG
LAVNLTYKDGLLAYAATRGDGAVGENITNNIKTIAAVPLKILSDNPPRLIEIRGEVYMPK
AGFEAYNARARLSGEKTFANPRNAAAGSLRQLNAAITATRPLAIYFYGIGACEDFDLPGS
HFLQLELLKSWGFRVSSETQKATGLSGCLAFYQSMLKRRMDLPYEIDGVVYKIDSIALQR
DLGYVARAPRFACAHKFPASEEMTELMAVDFQVGRTGALTPVARLKPVSVAGVTVSNATL
HNMDEIQRKDIRIGDTVVIRRAGDVIPEVVSVVLEKRPLETQSIHMPAQCPVCGADVIRE
EDEAVARCTGGLFCSAQLKRMLWHFASRKAMAIDGLGAGIIDQLVEERLVQDISDLYHLE
LDTVTNLPRMGKKSAENLLSAIEKSKKTTFPRFLYALGIREVGEVSARVLAAEFQDIDSL
KTASVERLMELRDIGPICAYHIVHFFAQAHNCEVIDKLLSYGVHWPQEERKQLDAQHPFY
GKTMVLTGTLTAMGREEAKAQLLAIGAKVSGSVSGKTDYVVAGTEAGSKLDKAIDLGVKV
LNEEEFLALLT
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagatattattttaatgaaaattaatgagttacgagaacgtatcaggttatat
gatcatcattactatgtattggatgcgcctttagttccagatatcgaatatgatcgctgc
tttaaagagttacaaaaacttgagagtgaaaatccacattatattacccctgattcacct
actcaacgcgttggtgttagtcctgcaggtgccttcgaagagattgtgcatctaaaaccc
atgctttcattggcgaacgttttttcaacagaagaattaaatgcttttatgaaaagaatc
gctgacagactcgataacaaagaagagttactttttacttgtgaaccaaagcttgatgga
ctcgctgttaatttaacctataaagatggcctattagcctatgcagcaactcgtggagat
ggtgcggtaggtgaaaacattacaaataatatcaaaacaatcgccgcagttcccctaaaa
atactaagcgacaatcctccgcgtttaattgaaattcgaggagaggtttatatgcctaaa
gcaggttttgaagcctacaatgctcgggcaaggctctcgggagagaaaactttcgccaac
ccacgaaatgccgctgcagggagcttgcgtcaattgaatgcggctattacagcgacgcga
ccattagccatttatttttatggtattggagcatgtgaggattttgatttgcccggaagt
catttcctccaacttgagcttttaaaaagttggggatttagagtttcaagtgagactcaa
aaggcaacagggctatcaggctgtctcgctttttatcaatctatgctgaagcggcgaatg
gatttgccttatgaaatagatggggtagtttataagatagatagtattgcattacagcgc
gatttgggctacgtggcgcgtgctcctcgctttgcttgtgctcataagttcccggccagt
gaggaaatgactgaattaatggcggtggattttcaagtagggcgtacgggagcgttaacc
cctgttgcccgtttaaaacctgtcagtgtggctggggttactgttagtaatgctacctta
cataatatggatgagattcaacgcaaagacattcgtatcggagatacggtagtcattcgt
cgggctggcgatgttattcctgaagtagtttctgttgttcttgagaagcggccgttagaa
acccaaagtattcatatgcctgctcaatgtccagtctgtggggctgatgtgattcgtgaa
gaagatgaagctgttgcacgctgtactggcgggttattttgcagtgctcagcttaaacga
atgctttggcattttgcctctcgcaaagcgatggcaattgatggtttgggtgcaggaatt
attgatcagctggtcgaagagcgattagtacaagatatatcagatctttatcatctggag
ttagatacagtgactaatcttccaagaatggggaaaaagtcggctgaaaatttactatca
gcaatagaaaaaagtaaaaaaacaacctttcctcgtttcttatatgcattggggatacgt
gaagttggtgaagttagtgcgcgggtattggcagcggaatttcaagatattgattccttg
aaaacagcatccgttgaaaggcttatggaactaagagatattggtccgatatgcgcttat
catatcgtgcatttttttgctcaggcacataactgtgaggttattgataaattattatcc
tatggcgtgcattggcctcaagaagaacgcaaacaacttgatgcccaacatcctttttat
ggcaagacaatggttctcacgggaaccttaactgccatgggacgtgaggaagcaaaagca
caattgcttgctattggtgccaaggtttctggcagtgtttcaggtaaaacggattatgta
gtagctggtactgaagcaggttcaaaacttgataaagccatagatcttggcgttaaggtt
ttgaatgaggaggaatttcttgctttgcttacttga
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