Lysinibacillus capsici: ICJ70_03865
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Entry
ICJ70_03865 CDS
T08448
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03030
DNA replication
lcap03410
Base excision repair
lcap03420
Nucleotide excision repair
lcap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICJ70_03865 (ligA)
03410 Base excision repair
ICJ70_03865 (ligA)
03420 Nucleotide excision repair
ICJ70_03865 (ligA)
03430 Mismatch repair
ICJ70_03865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcap03032
]
ICJ70_03865 (ligA)
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_03865 (ligA)
Enzymes [BR:
lcap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ICJ70_03865 (ligA)
DNA replication proteins [BR:
lcap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ICJ70_03865 (ligA)
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ICJ70_03865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ICJ70_03865 (ligA)
MMR (mismatch excision repair)
DNA ligase
ICJ70_03865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ICJ70_03865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
RNA_pol_A_CTD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UNT56230
LinkDB
All DBs
Position
756074..758077
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIVLEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYQMLSLSNAFNEADLREFDRKVRQAIGDQFSYVCELKIDGLAIS
LKYENGMFVQGATRGDGVVGEDITANLKTIRAIPLRLKEPITIEVRGEAYMPKKSFENLN
AQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGIDGHAEMLDY
LEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRASLHNEDLIR
DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMPKNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYHLTVEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSQEFGSMEAVMAATEEQL
VAIYEIGDKMASSLVEYFSNEDARAVIKRLAEAGVNMTYKGKKVEVAIGDSPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTEDNL
IEQLNLI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatagaacagcgtatagcggagttaaataaattattgcatgaatatggttat
gcctattatgtgttagataaacctgtcgtagcagatagtgtctatgaccagctattacag
gaactgattgtattagaagaagcaaacccatcccttatttaccccgattctcctacgcag
cgtgttggtggagcagtggtagagggctttaaaaaagtgacgcatgattaccagatgctt
agtctttcaaatgcttttaatgaagcggatttacgagaattcgatcgtaaagtacgtcag
gctatcggagatcaattttcttatgtatgtgagctgaaaatagatggtttggctatttca
ttaaaatatgaaaatggcatgtttgtacaaggggctacaagaggagatggtgtggtagga
gaagatattaccgccaatttaaagacaatccgtgcgattccccttcgtttaaaggaaccc
attacgattgaagtacgtggtgaggcatatatgccgaaaaaatcttttgaaaacttaaat
gcccaacgtgctgacaatggtgaggagttgtttgctaatcctcgtaatgctgctgctggc
tcattacgtcaattagaccctaaaattgcggccagtcgccaattatcaacgtttatctat
gccattggtggagacggtgaagtatatggtatcgacggtcatgcagaaatgcttgattat
ttagaaggcctaggcttcccttcaaataaagaacgccaacgatgctctacgattgaagag
gtaatggcctttatagaacattggacagaaaaccgtccaaaattagcttacgagattgac
ggaattgttattaaagttgaccgttatgctcagcaagatgaactaggttatacagcaaag
agtccacgctgggcaattgcctacaaatttccggcagaggaagttgttacaacgttactt
gatattgatttaacagtaggtcgtacaggtgttgttacgcctacagcgattttaaccccc
gtacaagtagcgggaacgacggttcaacgtgcttctttacacaatgaagatttaattcga
gataaggatattcgtcttggagatacagttattattcgaaaagctggtgacattattccc
caagttgtaggtgtgcttatagaacaacgtcctgaggattcagtcccttttgtcatgcca
aaaaattgccctgtttgtgatagtgaattgattcgtattgaaggcgaagttgccttgcgc
tgtgtaaatcctgcctgctttgcgcaaatcgcagaaagcataaaatattttgtttctcga
aacgcgatgaatattgacggtcttggggataaagtagtggagcaattattgcgtgcagat
ttaatacatgatgtttctgacctgtatcatttaacggtggagcaacttgtggaattggag
cgtatgggcgaaaaatcagcaactaatttagtaaatgctattcaagcatcgaaggaaaat
tcgatggagcgtttgttaattggactaggaattcgtcatgtcggtgaaaaagcagccaaa
atcgtatcacaggaatttggttcaatggaagcggtgatggctgcaacagaggagcagctt
gtggcaatttatgaaattggagataaaatggcttcatcgttagtggagtatttctcaaat
gaagatgcacgagcagtcattaaacgtcttgctgaagcaggcgtgaatatgacatacaaa
ggtaaaaaagtagaagtggcgataggtgatagtccttttgcaggtaaaacaattgtctta
actggtaaacttgagcaattgacacgcaacgaagcaaaagcgaaaatagaagagttaggt
ggtacagtcacgggtagtgtcagcaaaaaaacagatctagtgatcgcaggtgcggatgca
ggctctaaactaacaaaggctgagcaattgggtatcgaagtttggactgaagataactta
attgaacaacttaacctcatctaa
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