Lemur catta (Ring-tailed lemur): 123621570
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Entry
123621570 CDS
T08326
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lcat
Lemur catta (Ring-tailed lemur)
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcat03036
]
123621570 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
lcat03400
]
123621570 (SMCHD1)
Chromosome and associated proteins [BR:
lcat03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123621570 (SMCHD1)
DNA repair and recombination proteins [BR:
lcat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123621570 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
123621570
NCBI-ProteinID:
XP_045383358
LinkDB
All DBs
Position
16:complement(12135183..12277955)
Genome browser
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSEGTGEDGGGVGSRTVYLFDRREKESELGERALQVVERSDYAGFRASVCQT
LGISPEEKFVITTTSRKEITSDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLITEEKEKNSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEIR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTHFKGVITRPDLPSKKQGPWATYLAIE
WDGKIYKTGQLVKTIKTLPVFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEIRT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDALLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKIIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHASQLVTDIQPVLEASGLCLHYEEITKGPNCIIRGVTARGPVNSCQGKNYN
LKVILPGLKEDSQILKIRLLPGHPHRLKVKPDSEILVIENGTAFPFQVEILDESDNITAQ
PKLIVYCKFSGAPNLPVYVVDCSSSGTSILTGSPIQVQNIKKDQTLKARIEIPNFKDVPS
VEKTIKLLPSSHVARLQIFSLEGQKAIQIKHQDEVNWIAGDIMRNLIFQMYDEGEREINI
TSALAEKIKVNWTPEINKEHLVQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIITDQYGNQIQAFSPSSLSALSIAGVGLDT
SNLTTTFQENTQSISVRGIRFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRDLQNPLLVQLCDQWDNPAPVPHVKISLIKASNLKLMPSNQQHKTDDKG
RANLGVFSIFAPRGEHTMQVKAIYNKSTIEGPTIKLMILPDPEKPVRINVKYDKDASFLA
GGLFTDFMITVISEDDSIIKSINPARISMKMWKLSSSGNRPPATAETFSCNKIKDNDKED
GCFYFRDKVIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKSQPPTPAVS
NVRSVASRTLVRDLHLSITDEHSNHTGIDLVGTIIATIKGFNEEDTDTPLFNGKVRTLEF
PFVNGSAEITSLVLAENSPGRDSTEYFIIFEPRLPLLSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKSIFAYRGLFEANQQLLDEMKRQVEEARLKEAQLRNELQVHNIDIPTTQ
QMPHIEALLKRKLSEQDELKKKPRRSCTLPNYTKGTGDILGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLHFKP
IGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKIAHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLIVGKQIDILQQYRSALCKLDAVN
KDLNNQLEYLRTPDMKQKKQELDEQEKNLKLIEQKLGMTPIRKCNDSLRHSTKVEVTDCP
IPPKRMRRETIRQNRIINKLDI
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctctgaggggactggggaggatggcggaggtgtc
ggctccaggacggtgtacttatttgatcggcgcgagaaggagtccgagctcggtgagcgg
gcgctgcaggttgtggagcgctcggactacgcgggattccgcgcctcagtgtgtcagaca
ctcggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tctgataattttgatgaaactgttaaagatggagtcaccctatacctgctgcagtcagtc
aatcagttacttctaacagctacaaaagaacgaattgacttcttacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatccattaccattt
gcacttgcggaattaattgataattcattgtctgccacttctcgtaacattggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgttgcagtgata
gataatggaagaggaatgacttctaagcagcttaacaactgggccgtgtataggttgtca
aaatttacacggcaaggtgactttgaaagtgatcattctggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gagcttgtactttctaaagaagattttgagaagaaggagaaaaataaagaagcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcacagaggagaaggaaaaaaatagctttactgctgttgtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccatctttggacg
cgacagttagcgcatatctatcattactatattcatggcccaaaaggaaatgaaatacga
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaaa
gggaaggcacctaaaattgtcaacctaagggaaatacaagatgacatgcaaacattgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggattatccgataccatcctttcttatatgatagagaaacttaccctgatgatccg
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaag
gcagcaagagggaaaaggcctatttttgaatgtttttggaatgggcgattaataccctat
acatcagttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacactctttttaca
agaattttaaatggacaggagcaacgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtacgataaacaaataaaatttacacattttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcaaggcccctgggcaacatacttggcaatagaa
tgggatggaaaaatatacaaaacaggacagctggttaagacaatcaagacacttcctgtc
ttttatggaagcatagtaagattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactttatgatgaaataagaact
gtgccaattgcaaagctggataggacagttgcagagaaagctgttaagaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcggtaacttggcctgaaggagatgcatta
ttgcctaatgagattaggcctgctggaacccccattggtgcgctaagaattgaaatactg
aataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcacggagggtcaaagaaa
ctcctagttgagcttaaagttatattacactcttcaagtggaaataaagaaatcatttct
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaacattcaa
aagttggggaattacacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaaataattaaattttctgttaaagagggtaagcca
gagaaattttcatttggtctactggatcctccttttcgtgttggagttccattcaatatc
cctctggagtttcaggatgaatttggtcatgctagtcaactagtaactgatattcagcca
gttcttgaagcaagtggtttatgtttacattatgaagaaataaccaaaggaccaaattgt
ataattcgaggtgttacagccaggggccctgtaaactcttgtcaaggcaagaattataac
ctgaaggttatcctgccgggtttaaaagaagactctcagattttgaaaatcagattacta
cctggtcaccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtggaaatattagatgaatcagacaacataacagcacaa
ccaaaattgattgtttattgtaagttttcaggtgctccaaaccttccagtctatgttgtg
gattgcagtagttctggaaccagtattttaacaggatctccaattcaagttcagaatatt
aaaaaagaccagacacttaaagcaagaattgaaatacctaattttaaagatgtgccatct
gtggagaagactattaagttgcttcccagtagccatgttgcaagactgcagatattcagc
ttggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gacattatgcgtaatcttatttttcagatgtatgatgagggagaaagagaaatcaatata
acatcagctttagcagaaaaaattaaagttaactggactcccgagattaacaaagaacac
ttggtacagggtctacttcctgatgtacaggtaccaacatctgtaaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacct
cttcctgatgaacctaaacatttaaaatgtgagttaaaaggaggaaaaacagtacaaatg
ggccaagagctacaaggagaaatagttataataattacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgctttgtcaattgctggggttggacttgatacc
tcaaatttgacaactacttttcaggaaaacacacaaagtataagtgtaagaggcatcaga
tttattccaggtcctcctggaaataaggatctttgttttacctggcgtgagttttctgac
tttattcgagtgcagctaatttctggacctccagctaaacttctcctaatagactggcca
gaactaaaggagtccattccagtgattaatggaagagatttacagaaccctcttcttgtt
caactttgtgatcaatgggataatccagcaccagtaccacatgttaaaataagtctcata
aaagctagcaatttaaagctcatgccttcaaaccaacagcataaaacagatgacaagggc
agggctaatttgggagtgttcagtatttttgcccctaggggagaacatactatgcaggtt
aaagccatctataataagagtaccatagaaggacctacaattaagttaatgattcttcca
gaccctgaaaaacccgttcgtatcaatgttaagtatgacaaagatgcttcctttttagca
gggggtcttttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
agtattaatccagcacgtatttccatgaaaatgtggaagctgtctagcagtgggaatcgg
ccaccagcaactgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagtaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatattctcaacagtgaacagattatagttgatgtt
ctgcctaatcagccagtgaagttagttcctaaaagtcaaccacctacaccagctgtttct
aatgttcgttccgttgccagtaggaccttggtcagagatctacatctcagtatcacggat
gaacacagcaatcatactggaattgatttggttggcactattatagctaccattaaaggt
tttaatgaggaagatactgataccccactctttaacgggaaagttagaacacttgaattt
ccctttgtgaatggctcagctgaaatcacgagtctagtgctggcagaaaacagtcctgga
agagatagtactgaatattttattatatttgagcctcggctaccacttttatcaagaaca
ttagaaccatatatcctaccatttatgttttataatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccaattatctaaatctatttttgcatatagaggttta
tttgaagccaatcaacagcttcttgatgaaatgaaacgccaagttgaagaagcaagatta
aaagaggcccagttgcgaaatgagctacaagtacataatattgacattcctacaacacaa
cagatgccacacattgaagcacttttgaaaagaaagctatcagaacaggatgaactaaag
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcactggagatattttg
ggaaagattgcacatctagcacaaatcgaagatgatagagctgcaatggttatttcctgg
catctggcaagtgacatggactgtgtagtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaagtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcatttccgaaatggaaaattgcattttaagccc
attggagatccagtctttgctcgagatttgttaacgtttccagataatatagaacattgt
gaaacagtatttggtatgctgttaggagacacaattattttggataatctggatgcagcc
aatcattatagaaaagaggttgttaaaattgcccactgtcctacactgctgaccagagat
ggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcgaggaatggtatttggagctccagtaccaaaacagtgcctgatcgtaggg
aaacaaatagatattcttcaacagtatcgttctgctctgtgcaagctggatgctgtgaat
aaggaccttaacaatcaattagagtaccttcgtactccagatatgaagcaaaaaaagcaa
gaacttgatgaacaagagaaaaatctgaagctaatagagcaaaaactaggtatgactccc
atacgtaagtgtaatgactcattgcgtcattcaacaaaggttgaggtgacagattgtcca
attcctcctaaaagaatgagaagagaaactataagacaaaataggattataaacaaacta
gatatatga
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integrated database retrieval system
