Lemur catta (Ring-tailed lemur): 123646234
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Entry
123646234 CDS
T08326
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat04064
NF-kappa B signaling pathway
lcat04622
RIG-I-like receptor signaling pathway
lcat04623
Cytosolic DNA-sensing pathway
lcat05160
Hepatitis C
lcat05161
Hepatitis B
lcat05162
Measles
lcat05164
Influenza A
lcat05168
Herpes simplex virus 1 infection
lcat05169
Epstein-Barr virus infection
lcat05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
123646234 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
123646234 (DDX58)
04623 Cytosolic DNA-sensing pathway
123646234 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
123646234 (DDX58)
05160 Hepatitis C
123646234 (DDX58)
05171 Coronavirus disease - COVID-19
123646234 (DDX58)
05164 Influenza A
123646234 (DDX58)
05162 Measles
123646234 (DDX58)
05168 Herpes simplex virus 1 infection
123646234 (DDX58)
05169 Epstein-Barr virus infection
123646234 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lcat04054
]
123646234 (DDX58)
Enzymes [BR:
lcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123646234 (DDX58)
Pattern recognition receptors [BR:
lcat04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123646234 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
zf-C2H2_aberr
Motif
Other DBs
NCBI-GeneID:
123646234
NCBI-ProteinID:
XP_045418951
LinkDB
All DBs
Position
10:38501929..38544950
Genome browser
AA seq
941 aa
AA seq
DB search
MTTEQRRNLYAFRDYVRKTLDPTHILGYMAPWFRDDEVQCIQAEKNNKGPMEAATLFLKF
LLELQEEGWFQGFLDALSHAGYSGLYEAIENWDFQKIEKLEDYRSLLKRLQPEFKTRINP
TEILPEISVCLINQECEEIRQVSFNKGMMAGAEKMVECLLRSDKENWPKTLKLALEKEDN
RFSELWIVEKGAEDAEIKDLEDDNMETSNIQIFYREDLEYQNLSQNSCPPSEVSLTDLNS
RFKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSILICEHHLEKFSHGQKGKVVFFANQ
IPVYEQQKSVFSKYFERLGYRVTGISGATAENVLVEQIIENNDIIFLTPQILVNNLRNGT
IPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSLDPLPQVIGMTASVGVGDAKN
TDEAVDHICKLCASLDVSVIATVRENLEELEQIVYKPPKFFRKVESRTSDQFKFIISQLM
RETESLAKSIHGDLGKLFQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF
LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQHLTWRFEEKLQELES
VSMDPSKENPKLEDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIEGNSKLSFLKPG
ILTGRCRTNQDIGMTLPAQKCILDAFRTSGDNNILIATSVADEGIDIAQCNLVILYEYVG
NVIKMIQTRGRGRARGSKCFLLTSNADVIEKEKMNIYKEQMMTESILSLQTWDEAVFKEK
ILHIQVREKFIRDSQEKAKPVLDKENKKLLCGKCKALACYTADVRVIEDSHYTVVGDAFK
KCFVSKPHPKPKKFGSFEKRAKIFCAREDCSHDWGIHVKYRTFEIPVIKIESFVVEDVAT
GAQRLYPKWKDFHFEKIPFDAAEMSKGLGLNLQLQVIGEFE
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgagcagcggcggaacctgtacgccttcagggactatgtcaggaagacgctg
gaccctacccacatcctgggctacatggccccctggttcagggacgatgaggtgcagtgt
attcaagctgagaaaaacaacaagggcccgatggaggctgccacactttttctcaagttc
ttgttggagctccaggaggaaggctggttccagggcttcctggatgccctaagccacgca
ggttattctggactttatgaagccattgaaaattgggatttccaaaaaattgaaaagcta
gaggactatagatcacttttaaaacgtttacaaccagaatttaaaaccagaatcaatcca
acagagatccttcctgaaatctctgtatgtttaattaatcaggaatgtgaagaaattaga
caggtttccttcaataaagggatgatggcaggtgcagagaaaatggtggaatgccttctc
agatcagacaaggagaactggcccaaaactttgaaacttgccttggagaaagaagataac
cggttcagtgaactgtggattgtagagaaaggtgcagaagatgctgaaattaaagatctt
gaggatgataacatggaaacttccaacatacagattttctaccgggaagatctagaatac
cagaatcttagtcagaattcgtgtccaccttcagaagtatctctaactgacttgaacagc
cgatttaaaccaagaaattaccagctagagcttgctttgccagctaagaaaggaaaaaac
actataatatgtgctcctactggttgtggaaaaacatttgtttcaattctcatatgtgaa
catcatcttgaaaaattttcacatggacaaaaagggaaggttgtcttttttgctaatcaa
atcccagtgtatgaacagcagaaatctgtgttctcaaaatattttgaaagacttgggtac
agagttacaggcatttctggagcaacagctgaaaatgtcctagtggaacagattattgag
aacaatgacatcatctttttaacgccgcagattcttgtgaacaaccttagaaatggaact
attccatcactgtctgtctttactttgatgatatttgatgaatgccataataccagtaaa
caacacccgtacaatatgatcatgttcaattatctagatcagaaacttggaggatcgtta
gacccactaccccaggtcattgggatgactgcctcggttggcgttggggatgccaaaaac
acagatgaagccgtggatcatatctgcaaactgtgtgcttctcttgacgtatcagtgata
gcgacagtcagagagaacttggaggaactggagcaaattgtttataagcccccaaagttt
ttcaggaaagtggaatcacggacttcagaccaatttaaattcatcatatctcagctgatg
agggagacagagagtctggcaaagagtatccatggagacctcggaaaattatttcagatt
caaaatagggagtttggaacacagaaatatgaacagtggattgttaccgttcagaaagcg
tgcatggtgtttcagatgccagacaaagatgaagaaagcaggatctgtaaagcgctgttt
ttgtatacttcgcatctgcggaaatacaatgatgccctcattatcagtgaacatgcacga
atgaaagatgctctggattacttgaaagacttcttcagcaatgtccgagcagcaggattc
gatgagattgagcaacatcttacttggagatttgaagaaaagctgcaggaactagaaagc
gtttccatggatcccagcaaggagaaccctaaacttgaagacctttgcttcatcttacaa
gaagagtatcacttaaacccagagacaagaaccattctcttcgtgaaaaccagagcactt
gtggatgctttaaagaagtggattgaaggaaattctaaactcagctttctaaaacctggc
atattgactggacgttgcagaacaaatcaggatataggaatgaccctcccagcacagaag
tgcatactggatgcgttcagaaccagtggagataacaacattctgatcgccacgtcggtt
gctgatgaaggcatcgacattgcgcagtgcaatcttgtcatcctgtatgagtatgtgggc
aatgtcatcaaaatgatccaaaccagaggtagaggaagagcaagaggtagcaagtgcttt
cttctgactagtaatgctgatgtaattgaaaaagaaaaaatgaacatatacaaagaacaa
atgatgactgaatccattttaagccttcagacatgggacgaagcagtatttaaagaaaag
attctccatatacaggttcgtgaaaaattcatcagagacagtcaagaaaaagcaaaacct
gtgcttgataaagaaaataaaaaactgctatgtgggaaatgcaaagccttggcatgttac
acagctgatgtaagagtgatagaggactcccattacaccgtggttggagatgctttcaag
aaatgctttgtgagtaaaccacaccccaaaccaaagaaatttggtagttttgagaagaga
gccaagatattctgtgccagagaggactgcagccatgactggggaatccatgtgaagtat
aggacatttgagattccggttataaaaattgaaagttttgtggtggaggatgtggcaact
ggagctcagagactgtacccaaagtggaaggactttcattttgagaagataccatttgat
gctgcagaaatgtccaaaggccttggcctcaatcttcagctacaggtaataggtgaattt
gagtga
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