Liberibacter crescens: B488_06010
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Entry
B488_06010 CDS
T02395
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcc
Liberibacter crescens
Pathway
lcc03030
DNA replication
lcc03410
Base excision repair
lcc03420
Nucleotide excision repair
lcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B488_06010
03410 Base excision repair
B488_06010
03420 Nucleotide excision repair
B488_06010
03430 Mismatch repair
B488_06010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcc03032
]
B488_06010
03400 DNA repair and recombination proteins [BR:
lcc03400
]
B488_06010
Enzymes [BR:
lcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B488_06010
DNA replication proteins [BR:
lcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B488_06010
DNA repair and recombination proteins [BR:
lcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B488_06010
NER (nucleotide excision repair)
GGR (global genome repair) factors
B488_06010
MMR (mismatch excision repair)
DNA ligase
B488_06010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B488_06010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PorP_SprF
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGA64593
UniProt:
L0EVB9
LinkDB
All DBs
Position
662488..664644
Genome browser
AA seq
718 aa
AA seq
DB search
MEVYPVQNLTEEQAKQELSFLSTAIAHHDKLYYNDSAPEISDAEYDTLKQRYFALESYFP
HLVFYDSPSYRVGFTPSSTFASVVHSQPMLSLDNSFSDRNIEDFISGIYRSLGRPVDNSI
AFTVEPKIDGLSIAIRYEKGQLVTAATRGDGLVGENVTKNVLTIEQIPKILPKQAPDILE
VRGEIYMARSDFLLLNEQMISEGKNTYASPRNTASGSLRQLDAQITASRRLQFFAYGLGE
VSTDFVDSQYEALQKLRSWNFPINQWLKKFYNLKDILAYYHEIDLSRPRLDYDIDGVVYK
VDDFVLQKKLGSRSRSPRWATAHKFLAEQAYTRLLNIEIQVGRTGALTPVARLEPITIGG
VVVANATLHNEDYIKGLGASGELLREGRDIRIGDIVVVNRAGDVIPQVIDVVLDQRSPDI
QPFRFPSFCPVCKSHAVRDIDSKTGKIDSVRRCTGSFICPAQGLERLKHVVSRNAFNIKG
LGDKQIEFFFHSEDPSLYIKNAPDIFTLQHRQQESITKLENISGFGKVSVNKLYDAINER
RSISLDRFIFSLGIRHVGIETARCLAETYGSYKNFESSIKQVLYKEENACNMLKSVPLVG
DVIVHSIIEFYKEPGNLNVIDLLLQEVSLKDNNQDIFKKKSALSGKTIVFTGSLETMNRE
DAKIKAIQLGAKVSSSVSQLTDIIVVGKNPGSKVLQGNSLGISLINEQQWIDFIKKSF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaagtatatcctgttcaaaatttaacagaagagcaggcaaaacaagagctatcattt
ttatcaacagcgatagcccatcatgataaactgtattacaatgattctgctcctgaaatt
tctgatgctgaatatgatacattaaagcaacgttattttgctcttgaatcttattttcca
catcttgtgttttatgatagtccttcgtatagagtaggttttactccatcttcaactttt
gcaagtgttgttcattctcaaccgatgttatcgttagataatagtttttcagatagaaac
attgaggattttatttcaggtatttatcgttctttaggaagacctgttgataatagtatt
gccttcactgttgaacccaaaattgatggtctttctattgccattcgctatgaaaaagga
cagttggtgacagctgcaacgcgtggtgatggtcttgtcggtgaaaatgttacaaaaaat
gttttgacgattgaacaaattcctaaaattttaccaaagcaagcaccagatattttggaa
gtacgaggtgagatttatatggcaagaagtgatttcttgttactcaatgaacagatgatt
tctgaaggaaaaaatacttatgcaagtcctagaaatacagcttctggttcattgcgtcag
cttgatgcacaaattactgcaagtcgtcggttgcagttttttgcttatgggttgggagaa
gtttctacggattttgttgatagccaatatgaagcattgcaaaaattacgttcatggaat
tttcctattaatcaatggctgaagaaattttataatttaaaggatatattagcctattat
catgaaattgatttatcacgacctcgtttggattatgatattgatggagtcgtttataaa
gttgatgattttgtattacaaaaaaaacttggttcccgttctcgttctcctcgttgggct
actgcgcataaatttttagcagaacaggcttatacacgtcttttgaatattgaaattcag
gttgggcgtacaggagctcttactcctgtagcacgtcttgaaccgattactattggtgga
gttgtagttgcgaatgctactttacataacgaagattatattaaaggtttaggagcttct
ggtgaattactgcgtgaaggccgtgatattcgaataggagacattgttgttgtaaatcgt
gctggtgatgtcattccacaggttatagatgttgttcttgatcaacgttctccagatata
caaccttttagatttccatctttttgccctgtttgcaagagtcatgctgttcgagatatt
gatagtaagacaggaaaaatagactctgtacgtcgttgtacgggaagttttatatgccct
gctcaaggtctagaacgtctgaagcatgttgtttctcgtaatgcttttaatatcaaaggt
ttaggggataaacaaatagaatttttctttcattctgaagatccttctttatatattaaa
aatgctccagatatttttactttgcaacatcggcagcaagaatcaataaccaagcttgaa
aatatttctggctttggcaaagttagcgtaaataagctttatgatgctattaatgagaga
cgtagcatttctttagacagatttattttttctcttggtattcgtcatgtcggtatagaa
acagctagatgtctagccgaaacttatggttcttataaaaattttgaaagttctataaaa
caagttctttataaagaagaaaatgcatgtaatatgttaaaatccgttccgttggttggc
gatgtgattgttcattcaattatagagttttataaagagcctggtaaccttaatgtgatt
gatttactgttgcaagaagttagtttaaaagataacaaccaggatatttttaagaaaaaa
agcgctctttcaggtaaaacaatcgtatttacaggttctcttgaaacaatgaaccgtgag
gatgctaaaataaaggcaatacaattaggagcaaaagtatcttctagtgtatcacaacta
acagatattatcgtcgttggaaaaaatcctggctcaaaggttttacaaggaaactctttg
ggaatatctcttatcaatgaacagcaatggatagactttattaaaaaatctttttaa
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