Lates calcarifer (barramundi perch): 108872773
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Entry
108872773 CDS
T04895
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108872773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108872773
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108872773
Complex C
U5 SnRNP specific factors
108872773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
108872773
NCBI-ProteinID:
XP_018516150
UniProt:
A0A4W6FJL8
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All DBs
Position
LG11:complement(4806638..4819110)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLEAEDRDVDEGDEDDDDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGARNKIEHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgatgagtttggaaactacatcggtccagagctggactctgac
gatgatgaagatgatctggaggcagaggacagagatgttgatgagggtgacgaggatgat
gacgacgaacctgccgatgctgatgacgatgttccgggcatggaggtggtcctgcatgag
gacaagaagtactatcctacagcagaggaagtttatggtcccgaagtggaaaccatcgtc
caggaggaagatacacaacctcttacagagcccatcatcaagcctgtgaagaacaagcag
ttcacgttgatggagcaagagttacctgccactgtttatgatatggagttccttgcagat
ctgatggatggtcctgagctgatccgaaacgtcaccctttgtggtcaccttcaccacggc
aagacttgctttgtggactgcctgattgaacagacacatccagaaatcaggaagagagat
gatgtggacctccgatacacagacatcctctttacagaacaggagagaggagttgggatc
aagagtacccctgtcacgatggttctgccagattccaggggcaaatcataccttttcaac
atcatggatacaccaggccatgtgaacttctctgacgaggtcacatcaagcatccggatc
tcagacggtgttgtcctcttcatagatgcagcagaaggagtgatgctgaacacagagcgg
ctgatcaaacatgcagttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattgtggagctcaaactgcctcccacagatgcttattataaactgcgtcacatt
gtggatgaggtcaatggtttgctcagcacatactccacagatgagaacttggtggtgtct
cctctccttggaaatgtgtgcttcgctagctctcagtacagcatctgtttcaccctagga
tcctttgcaaagatctactcagacacctacggcgacatcaactataatgagtttgccaag
aggctctggggagatatttatttcaatcccaaaactcgcaagttcacaaagaaagctccc
agcagtaactctcaacgcagctttgtggaatttgttctggagcctctctacaagatcctt
tcacaggtggttggggatgtggacacatccctcccccgagttctggatgagctggggatc
cacctgactaaagaagaactgaaactgaacattagacccctgctgaggctggtctgcaac
cgcttctttggagaattcactggctttgtggacatgtgcgtacaacacatcccctcacca
caagagggtgccaggaacaagatagagcacacctacacaggcggcctggactcagacctg
ggggaggccatggctgagtgtgaccctgatgggcctttgatgtgccacaccactaagatg
tacagcactgaagatggggttcagttccatgcgtttggcagggtgcttagcgggaccatt
caggccggccagcccgtcaaggttttaggagagaactacacccttgaggatgaggaggac
tcccaggtctgcaccgtgggccgtctgtggatttctgtggccagatatcagattgaagtg
aatcgagttcctgctggcaactgggtcctcatcgaaggttgtgaccagcctattgtcaaa
accgccacaatcacagagcccagaggcaacgaagaggctcagattttcaggcctttgaaa
ttcaacacagcatcagttatcaagattgcagtggagcctgtgaacccatcagagcttcct
aagatgttggacggactgagaaaggtcaacaagagctacccatccttgaccacaaaggtg
gaggagtctggagaacatgttatcttaggcacaggagagctctacctggactgtgtcatg
cacgatctgcgcaagatgtactccgagatcgacattaaagttgctgatccagttgtgact
ttctgtgaaacagttgtcgagacttcatctctcaagtgctttgctgaaacgcccaacaaa
aagaataagatcaccatgattgctgagcccttggagaaggggctggctgaggacatagag
aacgaagtggtgcagatcacatggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgccaggtctatctgggccttcggaccagacacaacggga
ccaaacattcttgtagatgacacgctgccttctgaggtggacaaggcgctgctcggctcg
gtcaaagacagcatcgttcagggcttccagtggggcaccagggaaggacctctgtgtgac
gagcccatcaggaatgtcaagtttaagatcctggatgcagtcatcgctcaggagcctctc
cacaggggaggaggacaggtcatccctacagccaggagagtggtgtactctgctttcctc
atggccacgccaaggttgatggagccctattactttgtggaggttcaggctccggctgat
tgtgtatctgctgtctacacggtgctggctcgacgaaggggtcatgtcacccaggatgca
cctattccagggtctcctctgtacaccatcaaggctttcatcccagccattgactccttt
ggctttgagacagatctccggacacatacacaggggcaggccttcgctctgtctgtgttc
catcactggcagatcgtgccaggtgaccccctggacaagagtatcgtgatcagacctctt
gagcctcagcctgccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaagatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtgcttaactaccccatgtga
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