Lates calcarifer (barramundi perch): 108873211
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Entry
108873211 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger protein GLI2-like
KO
K16798
zinc finger protein GLI2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108873211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108873211
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
108873211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-C2H2
zf-H2C2_2
FOXP-CC
zf-C2H2_4
Zap1_zf1
zf-C2H2_aberr
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
108873211
NCBI-ProteinID:
XP_018516855
UniProt:
A0AAJ7LAU1
LinkDB
All DBs
Position
LG7_2:872017..940714
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AA seq
1435 aa
AA seq
DB search
METSASRAAEKKDKMDGNAFGDLPKKPSPSETRAPHHIFPTFHTPIPIDMRHHEGRYHYE
PHTLHTMHGPAGLAGSPVISDISLIRLSPAAVATGDSPFSPPHPYVNPHMEHYLRSVHGS
PTLSMISAARGLSPADLAHEHLKDRGLFGLPPPPPGASPAEYYHLMASHRSPYGELLMQG
AGATAGAHLTDYITPIDVSRFSSPRLTPRLSRKRALSISPLSDASIDLQTMIRTSPNSLV
AYINNSRSSSAASSSYGHLSVGGLSPSFPFPHPINPMAYQQLLSQQRGLSAFGHTPPLIQ
PPPAFSSRQPGLGLSSLPASAHNSDLTSKNPGSDSAVSSTVDPMITKRSKVKSEAEGLRP
SSPCSPNHHGSLLDLKDDVDRDECKQEPEAVYETNCHWEGCSKEYDTQDQLVHHINNDHI
HGEKKEFVCRWEDCSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCSKAYSRLENLKTH
LRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRK
HVKTVHGPEAHVTKKQRSDLPPRPPAPRENGENETGPRERVQTEDKISDNGSSRGVGDYL
HVKSIKTENSVMYQSSPGGQSSCSSEPSPLGSATNNDSGVEMAAHSGGSLGDLSTLDDLP
FVESLGFEDSTGGVAAVGLHFRKQLGTSQLLEHLKKERLKTVRDSCRWANNLTPPVLGTK
LPPIPASGSLLESPSMGGGLVSFPGSGLGKLSSGKSTLLENLSERRDSTSSTLSSVYTLS
RRSSGISPCYSSRRSSQASQFGANRPSNVSSADSYDPISADISRRSSQASQCGGSSGGAG
GWGGGGLASPLSLTPAQHYRLKVKYAAATGGAPPTPLPYMDQMCLKTHTALYGDPQKSST
TNKGLSSRQYSSYATRSLMPHEVPSNIPRRASDPVRRVTLDSLSQPQMQRYNSMGTLTMQ
PHPPPASDRRHSSQQGCQRSDGLHHYPYSLRPPSISENVTMEEMTGDIPEEDLMLPDFNT
DNGDAACRVSTNQQDFQQSYYQRRMAMTNMSPSMSPGQQRQTCPSSPRDNRSNLSVTLGR
TDVGQHYSKLQVRGNLAVLQQNQNFGSFYNNLGSNQQMIQNHANTTQQRCKQLNTEPGAN
CIQQQRFQQPSNLNEATGCQYRFDEGIGPYDKNGNTTCPTYTAAVNGSMLSPTCKQEPVN
MENVDMHFADAGFQPVQVKVEDREGSIMISGQQNCNMTSQNPLQTGSQSHLQPRPPTEPK
SLNRHLSGPKVMQQTRRPNNANPELSSGGVLGLHCSNSSDDNAMYYTGQIQVFEPNGNMD
HRVSPAVNVPPFENDAASPSSGDNQASRTVDAALEQAQIDFDSMLDDGDHSSLMSGTLSP
SLLQNLSQSSSRLTTPRNSVTLPTVPAGTGNMAIGDMSSLLTALAEESKFLNLMS
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggagacttcagcgtcgagagccgccgagaaaaaagacaaaatggacgggaacgctttc
ggagacctcccgaagaagccctcgccctctgagacaagagccccccaccacatcttccca
accttccacacgccgatcccgattgacatgcgccatcacgagggacgatatcactacgag
ccacacactctacacaccatgcacggccctgcgggtttggccggcagccccgtcatctct
gacatctccctgatccgcctctcgcctgctgccgtagcgaccggcgactccccgttcagc
ccgcctcatccctacgtcaaccctcacatggagcactacctgcgctccgtgcacggcagc
cccaccctgtccatgatctcagcggccagaggactcagcccagccgacctggcccatgag
cacctgaaagaccgcgggctgtttggacttcctccccctcctcccggggccagtccggca
gagtattaccacctgatggccagccaccggagcccctacggcgagctgctcatgcagggg
gccggggccaccgcgggggcccacctgaccgactacatcacccccatcgacgtgtctcgg
ttctccagccccagactgacgcccaggctgagcaggaagagggctctgtccatctcgccg
ctgtccgacgccagcatcgacctccagacgatgatccgcacttctccgaactcgttggtg
gcgtacatcaacaactcgcgctccagctcggccgccagcagctcctatggacacctgtcg
gtcggagggctcagcccgtccttccccttccctcatcccatcaaccccatggcctaccag
cagctcctgtcccagcagcgggggctcagcgccttcggacacactcctcctctcatccag
cctccgcctgccttctccagccgccagccgggcctcggcctctcctccctgcccgcctct
gcccacaacagcgacctgacgtccaagaaccccggcagcgactcggccgtcagcagcaca
gttgaccccatgatcaccaaaaggtcaaaggtgaagagcgaagcagagggactgaggcct
tcgtctccttgctcaccgaaccatcatggcagcctgttggacctgaaggacgacgtggac
cgggacgaatgcaaacaggagcccgaggccgtttatgaaaccaactgccactgggagggc
tgcagcaaggagtacgacacgcaggaccagctggtccatcacatcaataatgaccacatc
cacggagagaagaaggagtttgtgtgccgctgggaggactgttcgcgggagcagaagccc
ttcaaagctcaatacatgctggtggttcacatgcgccgacacacaggggagaaaccacac
aagtgcacgttcgagggctgctccaaggcctactcccgtctggagaatctcaaaacccat
ctgcgctcacacactggcgagaaaccctacgtctgtgagcacgaaggatgcaacaaagcc
ttctccaacgcctcggaccgagccaaacaccagaaccggacgcactccaatgagaaacct
tacgtatgtaagatccccggctgcaccaagcgatacacagaccccagctctctcaggaag
cacgtgaagacggtccatggccccgaagcccacgtcaccaagaagcagcgcagcgacctg
ccgcccaggccgccggcacccagggagaacggagagaacgagacggggcccagagagaga
gtccagacggaggacaagatctctgacaacggctcctccagaggcgtgggggactacctg
catgtcaaatccatcaagacagaaaactctgtgatgtatcagtccagccctggcggtcag
tcatcatgtagcagcgaaccatcaccacttggcagtgccaccaacaatgacagtggagta
gaaatggcggcgcacagcgggggaagcctgggggacctcagcaccctggacgacctgccc
tttgtggagtccttgggctttgaagattccaccggtggagtcgcggcggtgggtctccac
ttccgaaagcagctcggcaccagccagctcctggagcatctgaagaaggagaggctgaag
acggtgagggactcgtgtcggtgggccaacaacctaacacccccggtcctcggcaccaag
ctcccacccataccagcaagcgggtccctcctggagagtccaagtatgggtggtggtctg
gtctccttccctggttcaggattgggtaagctgagctctggtaaatcaactctgctggaa
aacctttcagagcgccgtgacagcacctccagcaccctgagctcagtttacaccctcagc
cgccgctcctcgggcatctccccctgctactccagccggcgctccagtcaggcctcgcag
tttggtgccaaccgccccagcaacgtcagctctgctgactcttatgaccccatctctgcc
gacatctcacggcgctccagtcaggccagccagtgtggaggaagcagcggaggagcagga
ggatggggaggaggaggactagccagccccctcagcctgaccccagcccagcactaccgc
ctcaaggtgaaatatgcagctgccactgggggtgcaccacccacccctcttccatacatg
gatcaaatgtgtctaaagacccacacagccctgtacggggacccccagaaatcctccacc
accaacaaaggcctgtcttccaggcagtacagcagctatgccacaaggagcctgatgccc
catgaggtcccgtctaacatcccccgccgagccagtgaccctgtgagacgggtgacctta
gactctctcagccagccacagatgcagcgctacaacagcatgggcacactgaccatgcag
ccccatccacctcctgcatcagatcgccgtcattcatcccagcaaggctgccagcgatca
gatggcctccaccactacccctacagcctgcgaccgcccagcatctctgaaaatgtcacc
atggaggagatgacgggtgacattcctgaggaggacctgatgctgcctgacttcaacact
gacaacggagacgcagcctgcagagtgtcaaccaatcaacaggacttccagcagtcgtac
tatcagagaaggatggccatgaccaacatgagccccagcatgagtccagggcagcaacga
cagacgtgtccatcttcaccgagggacaacaggtccaatttatctgtgacactgggacgt
acagacgttggccagcactactccaaactacaggtccgagggaacctggctgtcctccag
caaaaccagaactttggatctttttacaacaatctgggctccaaccagcagatgattcaa
aaccatgctaacacaacacagcagagatgcaaacagctgaacactgaaccaggagcaaac
tgcatccagcaacagagattccagcagccgtcaaatctcaacgaagccactggctgtcag
tacaggtttgacgaaggcatcggcccctatgataagaatggtaacaccacctgtccgact
tacacagcagcagtgaacgggagcatgctgagccccacctgcaaacaggagccagttaac
atggagaatgttgacatgcactttgctgatgctggatttcagcctgtgcaggttaaagtt
gaggaccgtgagggatctatcatgatttcaggtcagcagaattgtaatatgacctcccag
aatcccttgcaaactggcagtcagagtcatctccagccaagaccaccaacagaacccaaa
tctctaaacaggcacctgtcagggccgaaggtgatgcagcaaacacggcgcccaaataat
gcgaacccagaattatcaagtggtggagttttaggacttcactgcagcaacagctctgat
gacaatgccatgtactacacagggcagattcaagtatttgagccaaatgggaacatggac
catcgtgtttctcctgcagtgaacgtccctccttttgaaaatgatgcagcgtctcccagt
tcaggcgacaaccaggcgtccaggactgtagacgcagcactggaacaagcgcagatagac
tttgatagcatgctcgacgacggggatcactccagcctgatgtcaggaaccctgagccca
agtctgctccagaatttgtcccagagttcctctcgcctgacgacacccaggaactcggtc
acgctgcccacggtgccagcggggaccggaaacatggccattggggacatgagttcgctg
ctgactgctttggcagaggagagcaagttcctcaacttgatgtcttag
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integrated database retrieval system
