Lates calcarifer (barramundi perch): 108873235
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Entry
108873235 CDS
T04895
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108873235 (scn4ab)
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108873235 (scn4ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
108873235
NCBI-ProteinID:
XP_050924561
LinkDB
All DBs
Position
Unknown
AA seq
1778 aa
AA seq
DB search
MAPLLPPVGSEVFRRFTPASLEEIQRRHEAEEKERQRRKEKNIEIAEEDLPKPASDLEAG
KPLPFIYGDPPPELLNTPLEELDPFYQSQKTFIVLSKGNIIYRFNAEPSCYLLSPFSCLR
NFSIRILIHSVFSLFIMVTILTNCVFMTMSDPPPWSKTVEYVFTAIYTFEATVKVLSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLRQKCVLIPPLFGNHTSDVELNTGYH
GNNSLSNNTYGNNTGSFDYYEFINNPENYYFLPGQPDALLCGNSSDAGVCPEGFVCLKAG
RNPNYGYTSYDSFAWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLI
NLILAVVAMAYAEQNEATVAEAKQKEEEYAQIMEALKKREEEQAACRAALPEKPDSTLTS
EEGQEQEHTAMDDFEDDQRPCPPCWYAFADIFLKWNCCSCWQWIKQWLYTIVMDPFVDLG
ITICIVLNTVFMAMEHYPMTEDFEELLSVGNLVFTGIFTAEMVLKLLAMDPYYYFQVGWN
IFDSIIVTMSLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNL
TLVLAIIVFIFAVVGMQLFGKSYKDCVCRIAEDCELPRWHMNDFFHAFLIIFRVLCGEWI
ETMWDCMEVAGQAMCLIVFMMVLVIGNLVVLNLFLALLLSSFSGDNLAAPEEEGENNLQI
AINRINRAVAWIKSWILEHIWTVVGKKNHVNPDHIVVSSEEDNKKMKEVLPLTFVTSDQP
VSEVNAFSCSHGNLTSNYHNITFLRVPIAKAESEFESESESDFDTPEHEDEEENEDEEEE
KHSQCDESSACSTIQKLPEVKEEVDDEDLDSDAPEDCCTEKCYRRCPLLDINMSQGKGKV
WSNFRRTCFSIVEHNYFETFIIFMILLSSGALAFEDIYLEQRRVIKTVLEYADQVFTYIF
VVEMILKWIAYGFKTYFTNAWCWLDFLIVDVSLVSLTANILGYSELGAIKSLRTLRALRP
LRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYYCFNKTSEE
MFHPDKVNNKTECLTLINDNFTEVRWKNLKVNYDNVGMGYLSLLQVATFKGWMDIMYAAV
DSREVESQPMYEDNLYMYLYFVCFIIFGSFFTLNLFIGVIIDNFNQQKAKLGGTDIFMTE
EQKKYYNAMKKLGSKKPQKPVPRPENKFQGLVFDFVTKQFFDIFIMVLICLNMVTMMVET
DEQSQEKEIILYWVNLVFIIIFTTECTLKIIALRQHYFAVGWNIFDFVVVILSIVGLLLA
DIIEKYFVSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMF
IFSIFGMSNFAYVKKEGMMDDIFNFENFGNSMICLFMITTSAGWDGLLSPIMNTVPDCDP
DVENPGSPVRGNCGSPGVGIVFFTTYIIMSFLVVVNMYIAIILENFNVATEESSDPLCED
DFEMFYETWEKFDPDASQFIQYSKLSDFCDTLQDPLRIPKPNTIKLIHMDLPLVPGDKIH
CLDILLALTAEVLGDSGAMDTLKASMEEKFMANNPSKVSYEPISSTLRRKQEEVAATVIQ
RAYRKHLLRRTVKLASYKYREKTDRRRDVDLLPETEGLLYKRISQLYGNSQDTQEPDSGE
DPLLPPQVELQSEFVLHAAPPVNAPDFLQDENLRESIV
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atggcacctctgctgccccctgttggttcggaggtcttcagacgcttcacaccagcctca
ctggaggaaatccaacgacgacatgaagctgaagagaaagagcgacagaggaggaaggag
aagaacattgagatagcagaggaagatcttcccaaaccagccagtgacctggaggctggg
aagcccctcccattcatctacggagacccaccccctgagcttctcaacaccccattggag
gagctggatcccttctaccaatcacagaagaccttcattgtgctcagtaagggaaacatc
atctacaggtttaatgctgaaccttcctgttacctgctgagtccattcagttgtctgagg
aacttctctatcaggatcctcatccactctgttttcagtttgttcatcatggtgacgatt
ctgaccaactgtgtgttcatgacgatgagtgatcctcccccgtggagcaagactgtggag
tatgtgttcacagccatctacacgtttgaagcaacagtcaaagttctgtcccgaggattc
tgtgtcggagatttcaccttcctcagagacccctggaactggctggacttcatggtcatc
agcatggcatatctgacagagttcgttgacctgggaaatgtttctgcgttgaggacgttc
cgagttcttcgagccttgaaaaccatcacagtcatccccggtttaaagacaattgtcgga
gctctcatccaatcagtgaagaagcttgctgatgtcatgatcctgacggtcttctgtctc
agcgtctttgctctcattggtctgcagctcttcatgggaaacttgaggcagaagtgtgtc
ctgatcccgccactgttcggcaaccacacgtctgatgtcgaactcaacactggttaccat
ggcaacaacagcctcagcaacaacacctatggcaacaacacaggaagctttgattattac
gagttcatcaacaacccagagaactactacttcctgcccggtcagccggacgctctgctg
tgtggaaacagctctgatgctggggtctgtccagagggctttgtatgtctgaaggcggga
agaaatccaaactacggctacaccagttatgactcctttgcctgggcattcctggctctg
ttcagactgatgacccaggacttctgggaaaacctgttccagctgactttgcgagcagca
ggtaaaacctacatgatcttcttcgtggtcgtcatcttcctcggctcgttctacctcatt
aacctgatcctggctgtggtcgccatggcatacgcagagcagaacgaggccacggtggct
gaggccaaacagaaggaggaggagtacgctcaaatcatggaggcactgaagaagagagag
gaggagcaggcggcctgcagagcggcgctcccagagaaaccagactctacactcacatca
gaggaaggacaagagcaagaacacactgcaatggatgactttgaggacgaccagaggccg
tgtcctccatgttggtatgcctttgccgacatatttctgaagtggaactgttgcagctgc
tggcagtggatcaaacagtggctctacaccatcgtcatggacccatttgtcgacctcggc
atcaccatctgcatcgtcctcaacaccgtcttcatggccatggagcattatccaatgaca
gaggattttgaggagctgctgagcgtcggaaatctggtctttacagggatcttcacagct
gagatggtcctcaaacttctggccatggatccgtattactacttccaggtgggctggaac
atctttgacagcatcatcgtcaccatgagtctggtggagctgggattggctaatgttcag
ggcctgtctgtgctgcgctcattccgattgatgcgagtctttaagctggccaagtcatgg
ccaactctcaacatgctgatcaagatcatcgggaactctgttggggctctggggaacttg
actctggttctggccatcatcgtcttcatcttcgcagttgttgggatgcagttgtttggg
aagagttacaaagactgtgtctgtcgcattgcagaggactgcgaacttcctcgctggcac
atgaacgacttcttccacgccttcctcatcatcttcagggttctgtgtggagagtggatc
gagaccatgtgggactgcatggaggtcgcgggtcaggccatgtgtctgatcgtcttcatg
atggtcctggtcatcggaaacctggtggtcctgaatctgttcctggccttgttactgagc
tcgttcagtggtgataatctcgcagctccagaggaggaaggtgaaaataacttgcagatc
gccataaatcggatcaacagggctgtggcctggatcaaatcctggatcctagagcatatt
tggactgttgtggggaagaagaaccatgttaatccagaccacattgtggtcagcagtgaa
gaagacaacaagaagatgaaggaggttttgcctttgacctttgtgacctcagatcagccg
gtgtcagaggtcaatgccttcagctgtagccatggcaacctgaccagcaactaccacaac
atcactttcctgagggtccccatcgccaaggctgagtccgagttcgagtctgagtctgag
tccgactttgacacacctgaacatgaggatgaggaagagaatgaagatgaagaggaagaa
aagcactcccaatgtgacgaatcgtcagcctgcagcaccatacagaaacttcctgaggtc
aaggaggaagtagatgacgaagatctggattcagacgcacctgaagactgctgcactgag
aagtgttatcgtcgctgtccactcctggacatcaacatgtcccagggcaaagggaaggtc
tggtctaacttcaggagaacctgtttctccattgtagaacacaactactttgagaccttc
atcatcttcatgatcctgctcagcagtggagctctggcttttgaggacatctacctggag
cagcgtcgggtcataaagacagttctggagtacgcagaccaggtgttcacctatattttc
gtggtagagatgattctcaagtggatcgcctacggattcaagacctatttcaccaacgcc
tggtgttggctggacttcctcatcgtagacgtgtctctggtgtctctgacagcaaacatc
ctgggatactctgagctgggagccattaagtctctgaggaccctgagagctttgaggccc
ctgagggccctgtcccgcttcgagggcatgagggtggtggtgaacgctctggttggagca
atcccgtccatctttaatgtgctgctggtgtgtctgatcttctggctgatcttcagcatc
atgggagtgaacctgtttgcaggaaagttttattactgtttcaacaagacatcagaggag
atgttccaccctgacaaggtcaacaacaagaccgagtgcctcactctgatcaatgacaac
ttcaccgaggtccgctggaagaacctgaaggtcaactatgacaatgtgggaatgggctac
ctgtcgctgctgcaagtggccacatttaaaggctggatggatatcatgtatgctgcggtg
gactccagagaggtggagtctcagccgatgtacgaggataacctgtacatgtacctgtac
tttgtctgtttcatcatctttggctccttcttcaccctcaacctcttcatcggagtcatc
atcgacaatttcaaccagcagaaagccaagttgggaggaacagatattttcatgacagag
gagcagaagaaatattataatgccatgaagaaactgggctccaagaaacctcagaaacct
gttccacggcctgagaacaaattccagggtctggtctttgactttgtgaccaaacagttt
tttgacatcttcatcatggtgttgatctgcctcaacatggtgaccatgatggtggagacg
gatgagcagagccaggagaaagagattatcctatactgggtcaacctggtcttcatcatc
atcttcaccacagaatgcactctgaagatcattgcactcaggcagcactactttgctgtc
ggctggaacattttcgactttgtggtcgtcatcctgtccatcgtgggcctcctcctcgct
gacatcatagagaagtactttgtctcacccacgctctttcgtgtgatccgattggctcgt
attggtcgaattcttcgtcttattcgtggagctaaggggatccggacattgctgttcgcc
ctgatgatgtcacttcctgccctcttcaacattggcctcctcctcttcctcatcatgttc
atcttctccatcttcgggatgtcaaactttgcctacgtgaagaaggagggcatgatggac
gacatttttaactttgagaactttgggaacagcatgatctgtttgtttatgatcaccacg
tcagcaggatgggacggtctgctgagtcccatcatgaacactgtgccagactgcgatccg
gatgttgagaacccgggatcaccagtcagagggaactgtggtagcccgggggtgggcatc
gtcttcttcaccacctacatcatcatgtccttcttggtggtggtcaacatgtacatcgcc
atcatcctggagaacttcaatgtggccacagaggagagcagtgacccactgtgtgaggac
gactttgagatgttttatgaaacctgggagaagtttgaccctgatgcctcacagtttata
cagtacagtaagctgtcagatttctgtgacactctacaggatcctctaagaattcccaaa
cccaatactatcaaactgatccacatggatctgcctctggttcctggagacaagatccac
tgtcttgacatcctgcttgcactcactgcagaggtgttgggtgattcaggagcaatggac
actctgaaagccagcatggaggagaaattcatggcaaacaacccctcaaaggtgtcgtat
gaaccgatcagcagcaccctgcggaggaaacaggaggaggtggcagcaactgtgatccag
cgggcgtacaggaaacatctcctgcggcgaacagtcaaactggcatcctacaaataccgt
gagaagacagacagacggcgagacgtggatttgctgccagagacagagggacttctctat
aaaagaatcagtcagctgtatggaaacagccaggacacacaggaaccagattctggtgag
gacccacttcttccaccccaagtagagcttcagagtgagtttgtcctccatgctgctcca
cccgtcaacgctcctgacttcctgcaagatgagaacctgagggagtctatcgtgtga
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integrated database retrieval system
