KEGG   Lates calcarifer (barramundi perch): 108877581
Entry
108877581         CDS       T04895                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03420  Nucleotide excision repair
lcf04110  Cell cycle
lcf04114  Oocyte meiosis
lcf04120  Ubiquitin mediated proteolysis
lcf04141  Protein processing in endoplasmic reticulum
lcf04310  Wnt signaling pathway
lcf04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108877581
   04120 Ubiquitin mediated proteolysis
    108877581
  09124 Replication and repair
   03420 Nucleotide excision repair
    108877581
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    108877581
   04350 TGF-beta signaling pathway
    108877581
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    108877581
   04114 Oocyte meiosis
    108877581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108877581
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108877581
Enzymes [BR:lcf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     108877581
Ubiquitin system [BR:lcf04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   108877581
  Multi subunit type E3
   SCF complex
    Ring finger protein
     108877581
   Cul2 complex
     108877581
   Cul3 complex
     108877581
   Cul4 complex
     108877581
   Cul7 complex
     108877581
   Cul8 complex
     108877581
   Cul9 complex
     108877581
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      108877581
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      108877581
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 DUF8003 PHD_NSD
Other DBs
NCBI-GeneID: 108877581
NCBI-ProteinID: XP_018523181
UniProt: A0A4W6DF30
LinkDB
Position
LG11:complement(16604597..16607468)
AA seq 108 aa
MAAAMDVDTPSGTNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggcagcagctatggatgtagatacgccgagcggcacaaacagtggagcaagcaagaag
cgatttgaagtaaagaagtggaatgcggtggcactgtgggcctgggacattgtggtggat
aactgtgctatctgtcggaaccacatcatggatctctgtatagagtgccaggccaaccaa
gcttctgcaacctctgaggagtgcactgtagcctggggtgtctgcaatcatgctttccat
ttccactgtatttctcgctggctgaaaaccagacaggtttgccctctggacaacagggag
tgggagtttcagaaatatggacactag

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