Lates calcarifer (barramundi perch): 108877581
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Entry
108877581 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1
KO
K03868
E3 ubiquitin-protein ligase RBX1 [EC:
2.3.2.32
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
lcf04110
Cell cycle
lcf04114
Oocyte meiosis
lcf04120
Ubiquitin mediated proteolysis
lcf04141
Protein processing in endoplasmic reticulum
lcf04310
Wnt signaling pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108877581
04120 Ubiquitin mediated proteolysis
108877581
09124 Replication and repair
03420 Nucleotide excision repair
108877581
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108877581
04350 TGF-beta signaling pathway
108877581
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108877581
04114 Oocyte meiosis
108877581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108877581
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108877581
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.32 cullin-RING-type E3 NEDD8 transferase
108877581
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
108877581
Multi subunit type E3
SCF complex
Ring finger protein
108877581
Cul2 complex
108877581
Cul3 complex
108877581
Cul4 complex
108877581
Cul7 complex
108877581
Cul8 complex
108877581
Cul9 complex
108877581
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108877581
TCR (transcription coupled repair) factors
Cul4-CSA complex
108877581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-rbx1
zf-ANAPC11
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_11
DUF8003
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
108877581
NCBI-ProteinID:
XP_018523181
UniProt:
A0A4W6DF30
LinkDB
All DBs
Position
LG11:complement(16604597..16607468)
Genome browser
AA seq
108 aa
AA seq
DB search
MAAAMDVDTPSGTNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctatggatgtagatacgccgagcggcacaaacagtggagcaagcaagaag
cgatttgaagtaaagaagtggaatgcggtggcactgtgggcctgggacattgtggtggat
aactgtgctatctgtcggaaccacatcatggatctctgtatagagtgccaggccaaccaa
gcttctgcaacctctgaggagtgcactgtagcctggggtgtctgcaatcatgctttccat
ttccactgtatttctcgctggctgaaaaccagacaggtttgccctctggacaacagggag
tgggagtttcagaaatatggacactag
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