Lates calcarifer (barramundi perch): 108877710
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Entry
108877710 CDS
T04895
Symbol
hmgcs1
Name
(RefSeq) hydroxymethylglutaryl-CoA synthase, cytoplasmic
KO
K01641
hydroxymethylglutaryl-CoA synthase [EC:
2.3.3.10
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00280
Valine, leucine and isoleucine degradation
lcf00650
Butanoate metabolism
lcf00900
Terpenoid backbone biosynthesis
lcf01100
Metabolic pathways
lcf03320
PPAR signaling pathway
Module
lcf_M00095
C5 isoprenoid biosynthesis, mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
108877710 (hmgcs1)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
108877710 (hmgcs1)
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
108877710 (hmgcs1)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
108877710 (hmgcs1)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.3 Acyl groups converted into alkyl groups on transfer
2.3.3.10 hydroxymethylglutaryl-CoA synthase
108877710 (hmgcs1)
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Motif
Pfam:
HMG_CoA_synt_C
HMG_CoA_synt_N
PS_Dcarbxylase
ACP_syn_III
Lectin_C_term
Dak2
Motif
Other DBs
NCBI-GeneID:
108877710
NCBI-ProteinID:
XP_018523347
UniProt:
A0A4W6F7T7
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Position
LG9:20222498..20233918
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AA seq
515 aa
AA seq
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MPGSAAISCLGPWPKDVGIIAMELYFPAQYVDQAELEQFDGVPSGKYTVGLGQARMGFCS
DCEDINSLCLTVVQRLMERNSLSYDSVGRLEVGTETIIDKSKSVKTVIMQLFEDSGNTDV
EGIDTTNACYGGTAALFNAVNWVESSSWDGRYALVVAGDIAVYATGSARPTGGAGAVAML
VGPNAPLAFERGLRGTHMQHAYDFYKPDLVSEYPVVDGKLSIECYLSALDRCYSVYRNKI
HAQWQREGSERRFSLEDFGFLVFHSPYCKLVQKSLARLMLNDFLSHPNPNTETGPYTGLD
AFRDVQPEETYFDRDVEKAFMKASADLFERKTKASLLISNQNGNMYTPSVYGCLASLIAQ
HTPSQIAGQRIGVFSYGSGFAATLYSLRVTQDHTPGSGLDKLVSSLSDLKVRLDSRKKVS
PAVFSENMKLREETHHLASYVPRGSVEDLFPGTWYLTRVDDKHRREYARRPQDHDLPAEP
QLVRSSTATEHIPSPAKKMPRIPAATACPEAAVSN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatcagccgcaattagttgcttgggaccgtggcccaaagatgtgggtatcatt
gccatggaactgtacttcccagcccagtatgtggaccaggccgagctggagcagtttgat
ggtgtgccatctggtaaatacactgtgggactgggccaagctcgcatgggcttctgctca
gactgtgaagacatcaactctctgtgcctaacggtggtccagaggctgatggagaggaac
agcctgtcctacgacagcgtgggtcgactggaggttggcactgagaccatcattgacaag
tccaaatccgtcaagacagtcatcatgcagctgtttgaagactcaggcaatacagatgtg
gagggcattgacaccactaatgcctgctatggtgggacagctgcactcttcaatgctgtc
aactgggtggaatctagctcatgggatgggcgctacgctttggtggtagcaggtgacatt
gctgtctacgccacaggaagtgcccggcctactgggggtgctggtgcagtggctatgctg
gttgggcctaatgctcctctagcctttgaacgaggtctgcgaggaactcacatgcagcac
gcatatgacttctacaagccagacctggtgtcagagtacccggtggtggatggcaagttg
tcgatagagtgctacttgagtgccttggaccgctgctactctgtgtatcgcaacaagatc
catgcacagtggcaaagagagggttcagagaggcgcttcagcttggaggactttggcttt
ctagtctttcattccccatactgcaagctggtgcagaagtcgctggccagactgatgctg
aacgatttcctgagccaccccaaccccaacactgagacgggaccctacacaggccttgat
gccttcagagatgtacagccagaagagacctactttgatcgggatgtggagaaggccttc
atgaaggccagtgcagatctgtttgaaaggaagaccaaggcctccctactgatctccaac
cagaatggaaacatgtacacaccctctgtctacggctgcctggcatcactcattgcacaa
cacacaccttcacagatagcaggacagaggattggagttttctcctacggttcaggattt
gctgctactctgtattctctccgagtcacacaggaccatacacctggatctggtctggac
aaactcgtatccagcctgagtgacctgaaggtcagattggactcgaggaagaaggtttca
cctgctgtattctcggagaatatgaagctgagagaggagactcaccacttagccagctac
gtccctcgaggctcagtggaggatctgttcccagggacatggtacctgacgcgagtggat
gataaacaccgcagggaatatgcccgcagacctcaagaccatgacctgccagcagagccg
caacttgtacgctccagcactgccactgagcacatccccagtccagccaagaagatgcct
cgcatccctgcagccactgcatgccctgaggctgctgtcagcaactga
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