Lates calcarifer (barramundi perch): 108877916
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Entry
108877916 CDS
T04895
Name
(RefSeq) plakophilin-1 isoform X1
KO
K10387
plakophilin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108877916
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
108877916
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
HEAT_EZ
HEAT
Arm_2
HEAT_2
Motif
Other DBs
NCBI-GeneID:
108877916
NCBI-ProteinID:
XP_018523677
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All DBs
Position
LG6:complement(14736252..14752544)
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AA seq
723 aa
AA seq
DB search
MMPPDPLRSAMTIGNAEDTSLAVPSDNKLRSGQQRVLDQVHTIKRSKSKHGKNGSLSPSP
TSVIPQTLTTYSEFGSFKFLPGKANGTYSRSTATTGYSKGFNVQKSRTMSTKTLGGRHFS
SSGTWEQQIKASNWPQSPNGLKPSRSDPALAPPFSPAPAPVQAPAPLMRAKGQTVQSQHT
VQTRVNRHSTYSMTNGSQLTNSQTRMVRPPSAQSHTEGKMGTIKTSKIELQQSAINSGIN
LSEITLKEAVEYLSHPDDNFQQFGATFIQHTTFKEERAKQEVSELGGIPFLVGLLRSPSS
GVSQAAAGALRNLVFKDQNNKLEVQHCGGIAKALQLLKETDSTETQKQITGLLWNLSSAD
ELKGELTATALPALTENVVVPFTCWSDNSANNNIHPDVFYNATGCLRNLSCAQQKERRAM
RECSGLIDALMSYIQSCVAEDNPDDKSVENCTCILHNLTFQLEEESPGCFRKYAPPTEGK
KSPTVGCFSPKSNRIQKQFLFDVNRPMPEDSNPTGENWLNHPKAMQTYLSLLGSSQKDAT
LEACCGALQNLTATRGPGSSAMSQILVQKLGALPHMSSLLKSPNASLQKTAMSLLNNLSR
TNGLQTSIAKQTLPELTSLLSSGPREMGKNDDTIATTCNTVRSLMLGDPEVSKKVINNEL
VTSLADLSENGSFPKGSKAASLLLYSLWNEKSFQGVVKKMGLAKSLFVNENTSAVHRAMQ
VIE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctcctgacccgctgcgatcggcgatgacaatcgggaacgcggaggacacttcg
ctcgctgtaccctccgataacaagctgcgctcgggacagcagcgcgtgctggatcaagtg
cacaccatcaagaggagcaagtccaaacacgggaagaacggctcattgtctccctcacct
acaagtgtgattccgcagactttgacaacatacagtgaatttggatcgttcaagtttttg
ccaggcaaagcaaatggcacctacagccgctccaccgcgacaacgggctacagcaaaggg
ttcaatgttcagaagagtcgcactatgtccactaaaactttgggaggaagacatttcagc
tcctcaggcacgtgggaacagcaaatcaaagcctccaactggccccagagtcccaatggg
ctgaaacccagtcgcagtgaccctgccttggctcctccattttctcctgccccagcaccg
gtacaggcacctgcaccccttatgagagccaaagggcagacggtccagagccagcacact
gtgcagactcgagtaaatagacacagcacctattccatgaccaacggctctcagctgacc
aacagccagacgcgcatggtccggccgccctctgcccagtcccacactgagggcaagatg
ggtaccatcaaaacttctaagatcgagctgcagcagtctgcgattaacagtgggataaac
ctgtcagaaatcactctaaaggaggctgtagagtacctgtctcaccctgatgacaatttc
cagcagtttggagccaccttcatccaacacaccaccttcaaagaggagcgtgctaaacag
gaggtttccgaactagggggtatcccctttctggtaggcctgctgcggagccccagctct
ggggtgagccaggctgccgctggggctctgaggaacctggtgtttaaggaccagaacaac
aagctggaggttcaacactgtggtggtatagctaaagccctgcagcttctaaaagagaca
gattctactgagactcagaaacaaatcacaggcctgctatggaacctgtcgtccgccgac
gaactgaagggagaactaacagcgacggcactgccagccctgactgagaatgtggtggtg
ccattcacctgctggtcagacaacagcgccaacaacaacatacaccctgatgtcttctac
aatgccacagggtgcctgaggaacctgagctgcgcccagcaaaaggagaggcgtgcaatg
agagagtgcagtggcctcatcgacgccctcatgagttacatccagtcctgcgtggcagag
gataaccctgatgacaagtctgtggagaactgtacatgcatcctccataacttgaccttc
caactggaggaggagtcccctgggtgcttcagaaagtatgctcctccgacagagggcaag
aagagccccacagttggatgcttcagccccaagagtaacaggattcaaaagcagtttttg
tttgacgtgaatcggccgatgccagaggacagcaacccgacgggtgaaaattggttgaac
catcccaaagctatgcagacctacctgtctttgctgggctcgtcccagaaagacgccacc
ctggaggcctgctgcggcgccctgcagaacctcactgccaccaggggaccgggctccagt
gccatgagccaaattctggttcagaagttgggtgctctgccgcacatgtcctctctgtta
aagtcacctaatgctagcctgcagaagacggccatgtccctgctgaataacttgtctcgg
accaacggcttgcagacctccatagcaaagcagactctgcctgagctcacaagccttctc
tcctctggaccccgggaaatggggaaaaacgacgatactatagcaacaacttgtaacaca
gtacggagtctgatgctgggagaccctgaggtcagcaagaaggtcattaataatgaactg
gtgacatcactggctgacctcagcgagaacgggtcttttcccaaaggcagcaaagcagcc
tcactgctgctctacagcctatggaacgagaagagttttcagggtgttgtgaaaaagatg
ggattggccaagtcgctttttgtcaatgagaacacctcagcagtgcacagggcgatgcaa
gttatcgagtga
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