Lates calcarifer (barramundi perch): 108878507
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Entry
108878507 CDS
T04895
Symbol
traf2a
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04137
Mitophagy - animal
lcf04141
Protein processing in endoplasmic reticulum
lcf04210
Apoptosis
lcf04217
Necroptosis
lcf04621
NOD-like receptor signaling pathway
lcf04622
RIG-I-like receptor signaling pathway
lcf04920
Adipocytokine signaling pathway
lcf05132
Salmonella infection
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108878507 (traf2a)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108878507 (traf2a)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108878507 (traf2a)
09143 Cell growth and death
04210 Apoptosis
108878507 (traf2a)
04217 Necroptosis
108878507 (traf2a)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108878507 (traf2a)
04622 RIG-I-like receptor signaling pathway
108878507 (traf2a)
09152 Endocrine system
04920 Adipocytokine signaling pathway
108878507 (traf2a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108878507 (traf2a)
09171 Infectious disease: bacterial
05132 Salmonella infection
108878507 (traf2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878507 (traf2a)
04121 Ubiquitin system [BR:
lcf04121
]
108878507 (traf2a)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108878507 (traf2a)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108878507 (traf2a)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
108878507 (traf2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_4
zf-C3HC4_2
Sina_ZnF
zf-RING_5
zf-C3HC4_4
zf-RING_6
MATH
Tropomyosin
TRAFD1-XIAF1_ZnF
GCSF
zf_C2HC_14
Motif
Other DBs
NCBI-GeneID:
108878507
NCBI-ProteinID:
XP_018524804
UniProt:
A0A4W6G798
LinkDB
All DBs
Position
LG13:complement(21321572..21342740)
Genome browser
AA seq
566 aa
AA seq
DB search
MAAQEPSPPSSLEGNKPGFPKKILANSLEDKHLCNSCQKILRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIKEDLFEEPTSILKQGGAFPDNAARREVEALAAVCPNEGCTWTGTIKE
FEVSHEGNCDFMIILCPSCKELMRANEQERHNERECPERTLNCKYCKEPFLLKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFKAPCRFHVVGCDTSVEKEKIHDHERQCS
YEHLNLLLHFIMGIKVSLESLQPQSLEVASHKLQELHQSLRDLEQKMSQLGGAAPVQGAC
APTLATSFTPLPSAMGAALELQLQSEKTKVAELSRRCQELELKVSTFENIVCVLNREMER
SCTTMEAYNRQHRLDQDKIEILNNKVRQLERTVSLRDLSIVEMEGKMREMSAATYDGIFV
WKISDFTKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMR
GHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQRPVSDMNIASGCPLFCSL
SKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaggaaccgtctccaccatcttccctggaaggcaacaaaccgggcttccca
aagaaaattttggccaacagcctcgaagacaagcatttgtgcaattcgtgccagaaaatt
ctgagaaggcctctgcaagcccaatgtggtcaccgtttttgttcgttctgtttcaacaaa
attgtgagttctggaccacagaaatgcagtgcttgcatcaaagaagacttatttgaggaa
cccacctctattctcaagcaaggtggtgctttcccagacaatgcagctcggagagaggtt
gaggccttggcagctgtctgtcccaatgagggatgcacgtggacgggaactatcaaagaa
tttgaggttagccatgagggcaactgtgacttcatgatcatcctgtgtccttcctgtaaa
gagctgatgagagcaaatgaacaggaacgccacaatgagagagaatgtccagagaggaca
ctcaactgcaaatactgcaaagaacccttcttgttgaagaacatcaaggctcatgatgaa
atctgtccaaagtacccgatgatttgtgaaggttgtgcaaagaaaaagatccccagagaa
aagtatgtggaccatattaagttctgcagtaaatttaaagcaccatgcagatttcatgtt
gttggctgcgatacgtctgtggagaaagagaagattcatgaccatgagcggcagtgttcc
tatgaacacctcaacttgctcctgcatttcatcatgggcatcaaagtgagcctggagagc
ctgcagccccagagtttggaggtggccagccacaagctgcaggaactccaccagtccctc
agggacctggagcagaagatgagccagctgggtggggctgctcccgtgcagggtgcatgt
gccccgaccctggccacctcctttaccccgctacccagcgccatgggtgccgcactggag
ctgcagctccagagcgaaaagaccaaggtggcagagctgagccggcgctgccaggagctg
gagctcaaagtgagcacattcgagaacatcgtctgtgtcctcaacagggagatggagcgc
tcctgcaccaccatggaggcctataaccgccagcaccgactggaccaggacaagattgag
atcctcaacaacaaggttcgtcagctagagaggactgtgagtctgagagacctatccatc
gtggagatggaggggaaaatgagggagatgtctgcagccacatatgacggtatctttgtc
tggaagatatcagatttcaccaagaagaggcaagatgccgtggctggccgtgcccctgct
atgttctctccagccttttataccagtaaatatggctacaagatgtgtttgcgaatctac
ctgaatggagatgggacgggccgcggcacccacttgtctctgttctttgtggtgatgaga
ggacacagcgacgcactcctcaagtggccttttaatcagaaggtcaccctaatgctgctt
gaccagaacaacagggagcatataatcgatgccttccggcccgacatctcctcctcatcc
ttccagaggcccgtcagtgatatgaacatcgccagcggctgtccactcttctgttcactc
tccaaactggactctaaaaattcttacatacgcgatgacaccatctttatcaaggccatt
gtagacctcactggactttag
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integrated database retrieval system
