Lates calcarifer (barramundi perch): 108881770
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Entry
108881770 CDS
T04895
Name
(RefSeq) vascular endothelial growth factor receptor 1 isoform X1
KO
K05096
FMS-like tyrosine kinase 1 [EC:
2.7.10.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04510
Focal adhesion
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108881770
04020 Calcium signaling pathway
108881770
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108881770
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108881770
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108881770
Protein kinases [BR:
lcf01001
]
Receptor tyrosine kinases (RTK)
VEGFR family [OT]
108881770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_3
I-set
Pkinase
Ig_2
ig
VEGFR-1-like_Ig-like
Ig_VEGFR-1-like_5th
V-set
VEGFR1-3_N_Ig-like
VEGFR-2_TMD
Ig_4
Izumo-Ig
C1-set
Ig_5
C2-set_2
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
108881770
NCBI-ProteinID:
XP_018529417
UniProt:
A0A4W6DQN2
LinkDB
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Position
LG24:11666748..11699090
Genome browser
AA seq
1277 aa
AA seq
DB search
MMNCILICLLCGLYGVLARDREQKGKYSVPVLDVKTRQLVLATNHTLVLGCRGRWELIWA
FPSGLARDQVRVEESRCGRTKHHYCSRMTVSRSRAQHTGQFSCGYKHRPQKQTSVYVYVT
DSQQPFVERPGMSPDVLYLKTGEQLVIPCPVTHPNVTTTLVKYPNDSLSPDQRNIIWNST
QGFTIRSPTLYYTGLFFCQTITDGVTHLSHKYYIHRPVSNIMAVYLNSSGPVQALKGNSL
VLNCTAKGELNTRVSIIWDYPGKSNNVGSTTKRLVKHRLHMLFYSILTIPKLQRSDRGLY
TCRVTSGENTKQEQVNVTVYDRPFIHLRPRHRSVLEVQAGQKSYRISPKLKAFPAPEVIW
FKDGMVAAEQCSRYHMDGHSLVIRDVAEEDAGKYTVLVQIQEHGLYKNLTLTLVVNVSPQ
IGEKAVSLQDPGSVPRGIRRALHCTSHGVPPPHIQWLWHPCPSKGLCVCPTSSSLWSLVT
ESLPATSTHNHILSVTHRQEVLQGKKKTVGVLTVAEAFVSGVYRCVASNSVGADQLDVHF
YITDVPGGFSVNQQEEPREGGDLHLTCVANKYLYTALSWQRVNDTEGVQSHRSALSSQQF
TSGEFSNSLVLLLSNLTARDAGTYRCSTRHLITGQETHLDTQVAVTILEPPVLRNNLTDC
TVNVSSSVTLSCPSQGIPPPTITWYKDEHALSQGSGIVISPEDGTLHIDRITVEDQGLYT
CQATNERGSAESSAYIWVTGASETSFLEIPTLTCTCVVATLFWLLLTLFIRKLKQPSASN
TKPEYLSIILDTGEGPIEEQCERLQYDPNQWEFPRERLKLGKPLGRGAFGKVMQASAFGI
DSASSCRTVAVKMLKEGATTNEHKALMTELKILNYIGHHLNVVNLLGACTKPGGPLMVIV
EYCRYGNLSTFLKSKREVFVHNRLARGKDGGLSCVSGVSDSQSLVKTEFDHRDKTDNDLD
PKSASSSLFLEDLISFSFQVARGMEYLASRKCIHRDLAARNVLLSDNKVVKICDFGLARD
IYKDPDYVRKGDARLPLKWMSPESIFDKVFTTQSDVWSYGILLWEIFSLGASPYPGLHID
EEFCHRLKAGTRMRAPEYSTPEIYSTMLACWEASPSDRPTFTNLVETLGDLLQARVQQDG
KDYIPLGSFMSGDTNRSDTLKENPLAVTNLSYMRGMATLQTFEELSCQEPDNPDDEQSDS
GMVLPSEELKHMTWSNSTKKLSRFFGFKCRDNKVPFLCSDIPGLRDYEPSILPCDWESDE
GGSPPPDYNSAFLYPSL
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattgtattctcatctgcctgctatgtggattgtatggtgttttagcaagagat
agagaacagaaggggaaatacagtgtccctgtcctggatgtgaaaacccggcagctggtc
ctggccaccaaccacacactagtgctcggctgcaggggccgctgggagctgatatgggcg
ttcccatcagggttggccagagatcaggtgcgagtggaggagtcacgctgtgggaggacg
aaacatcactactgcagccgcatgacggtcagccgcagccgggcccagcacacaggccag
ttcagctgcggatataagcaccgacctcagaaacagacctctgtttatgtatatgtcaca
gacagccagcagccatttgtggaacgtccgggtatgagcccagatgtgttgtacctgaag
acgggggagcagctggtcatcccctgcccagtcacccaccccaatgtcaccaccacgctg
gtgaagtaccccaacgacagtctgagtccagaccagaggaacattatctggaacagcaca
cagggtttcaccatcagaagtcccaccctgtattacaccggcctcttcttctgccagacc
atcactgatggtgtcacacacttgtcacataaatactatattcacagaccagtgagtaac
atcatggctgtgtatctgaacagcagtggacctgtgcaggccctgaagggaaatagtctg
gtcttaaactgtactgccaaaggggagttgaacaccagagtcagcatcatctgggactac
cctggaaagagtaacaatgtcggctccaccaccaagaggctcgtcaaacacagactgcac
atgttgttctacagtatcctaaccatcccgaagctccagcgatcagaccgaggcctctac
acatgccgagtcaccagcggtgaaaacaccaagcaagagcaagtcaacgttactgtctat
gaccggccgttcatccatctgaggcccaggcacagatctgtgttggaggttcaagcagga
cagaaatcttaccgaatctctcccaaactaaaagcattccctgcccctgaagtcatctgg
tttaaggacggcatggtggcagcagagcaatgctcccgataccacatggatgggcattcc
ctggtgatccgggatgtcgcagaggaggatgctgggaagtacactgtcctggtacaaatc
caggagcacggactctacaagaatctcacgctcacactcgttgtcaacgtgagtcctcag
ataggggagaaagcggtgtcactgcaggacccaggctcggtgccacgggggatcaggcga
gccctacactgcacgtcccatggagtccctcctccacacatccagtggctctggcatccc
tgcccgtccaaaggcctgtgtgtgtgtccaacctcctcctcactgtggagccttgtgacg
gagagtctccccgccacatccacacacaaccacatcctgagtgttactcacagacaggaa
gtgcttcaggggaagaaaaagacagtgggggtcctgactgtggcagaggcctttgtgtct
ggagtatatcgctgcgttgcctccaactctgtcggcgcagaccagctagacgtccacttc
tacatcacagacgtcccaggaggcttcagtgtaaaccagcaggaggaaccaagagagggc
ggagatctccacctcacctgtgttgccaataagtacctgtacacagccttgtcatggcaa
cgggtgaatgacacagagggtgtccaatcccacagatctgccctaagtagtcagcagttc
acatcgggggaattctccaactctctggttctgttgctaagcaacctgacagccagagat
gctggaacctacaggtgctccacccgccacctcatcacgggacaagaaacacatctggac
acacaggtggcagtcacaattctggagcctccggtgctgcgtaataatttgacagattgt
acagtcaacgtcagcagctcagtgacccttagctgtccgtctcaaggcatcccaccccct
actatcacatggtacaaagatgaacatgctctgtcacagggatcaggtattgtcatatca
ccagaggatggcaccctccatattgaccgaatcacagtggaagaccagggtctgtatacg
tgccaggccaccaatgagaggggatcagcagagagctctgcctacatatgggtcaccggt
gcctcagagacctcatttttggagattcccactctcacttgtacctgtgtggtggccact
ctcttctggcttttgctcacactcttcatacggaaactgaaacagcccagtgcttctaac
accaagccagagtatctgtcaatcattctggacactggagagggaccaatagaggagcag
tgtgaaagactgcaatacgaccccaaccaatgggagttccctcgggagcgcctcaaatta
gggaaacctctgggccgtggagcctttggtaaggtgatgcaggcatctgcgtttggtata
gacagtgcctcaagctgcaggactgtggctgttaagatgctcaaagagggagctacaacc
aacgagcacaaagctctgatgactgaattgaagatcctcaactacatcggacaccatctg
aatgtagtgaaccttctgggggcctgcaccaagccaggaggaccactgatggttattgtt
gagtactgtcgctatggaaatctctctaccttcctgaagagcaagagagaggtgtttgtg
cacaaccggttggccagagggaaggatggagggctgagttgtgtcagcggtgtgtctgac
agccagagcctcgttaaaacagaatttgatcacagagacaagacagacaatgaccttgat
ccaaaatctgcatccagctctttattcctggaagatctcatctccttcagctttcaggtg
gcacgtggaatggagtatctggcctctcgcaagtgtattcacagagatctggcagccagg
aacgttctgctttctgacaataaagtggtgaagatctgtgacttcggcctggcccgagac
atctacaaagaccctgactatgttcgcaaaggagatgctcgcctccctctcaagtggatg
tctcctgagtccatctttgataaggtgttcaccacccagagtgacgtgtggtcctatggc
attctgctgtgggagatcttctctttgggagcttccccgtaccctggtctccacatagat
gaagagttttgccacagactgaaggctggaacaaggatgcgagcaccagagtacagcaca
cctgagatttacagcacaatgctggcatgttgggaggccagtccctcagaccgacccacc
ttcaccaacctggtggagacactgggagacctgctgcaagcaagggttcagcaggatggg
aaagattatattcctctgggatcgttcatgtctggagacacaaatcgcagcgacaccttg
aaagagaacccactcgcagtcacaaacctgagttacatgaggggtatggccacactccag
acttttgaggaactgtcctgccaggagccagacaaccctgatgatgagcagagtgacagc
ggtatggtcctaccatctgaagagctgaagcatatgacgtggagtaacagcactaagaag
ctcagcaggttctttggcttcaagtgtcgggacaacaaggtgcccttcctgtgcagtgac
atcccaggtctccgtgactacgagccgtctatcctgccgtgcgactgggagtctgacgag
ggcggctcccctcctccggactacaactctgccttcctctacccctccctctag
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