Lates calcarifer (barramundi perch): 108881916
Help
Entry
108881916 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: PVR cell adhesion molecule related 2 like
KO
K06531
poliovirus receptor-related protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03266
Virion - Herpesvirus
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04517
IgSF CAM signaling
lcf04520
Adherens junction
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
108881916
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108881916
04517 IgSF CAM signaling
108881916
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108881916
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108881916
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108881916
04090 CD molecules [BR:
lcf04090
]
108881916
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Nectin family
108881916
CD molecules [BR:
lcf04090
]
Proteins
108881916
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
C2-set_2
V-set
ig
I-set
Ig_2
Ig_PVRIG
DUF8063
ASFV_P17
DUF2970
Ig_CD22
Motif
Other DBs
NCBI-GeneID:
108881916
NCBI-ProteinID:
XP_050924532
UniProt:
A0AAJ8B3H0
LinkDB
All DBs
Position
LG3:complement(19485418..19725444)
Genome browser
AA seq
498 aa
AA seq
DB search
MARDYASRCPVSPVRNTWLVAAAILLVAKGVVAQKVRVEEELEAYPTESVDLRCQFIDGG
GRTKLTQVSWIWEPTDGQRDNIAVYHPIYGQSFPNPSFRDRVVFLHNSLENPSIRISNLR
MSDAGRYTCEYATYPSGNEQGTTTLIMLAKPKNSAKVVTVQAGTKSVVVAQCEAAEGKPA
ATIKWLASVGGNHSTSTTNGPDGTVTVRSEYRLVPTPTDNGREVTCMVDQRTQERPWVYP
VKLSVEYPPSVSIEGYDNNWYVGRSDAALLCLANANPAPTTITWTAASGSLPDTVVVDGN
KLIVRKVDDAVNTTFICEVKNKHGASKHQITTIVIAEKRQITPGPPTGAVIGGILGALAF
IGIIVGIVFYIRKRQEDGEGPPKHKPPPPVKAGSSTEMLNKPSEPPTATETAPLSPGEVY
YEPTGREPVTNLDDETTGALNGGAPPVLDDSAKYDNINELKDHSADGHHGNDMDSSNHEP
PAANISRGESFVSPAMYV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgagagattacgcatcgcgctgtccggtgtctccggtgagaaacacttggctggtg
gcagcagcgatcctcctcgtagccaaaggcgtcgtggctcagaaagtgcgagtcgaggag
gaactggaggcgtatcccacagagtccgtggatctccgttgccagttcatcgatggagga
ggccgaaccaagctcacacaggtgtcttggatatgggaacccactgatggccaacgggac
aacattgctgtgtaccacccaatctatggacagagtttccccaacccgtctttcagagac
cgagttgtcttcctgcacaacagtctggagaacccgtccattaggatttctaacctaaga
atgtccgatgctggtcgttacacctgtgagtacgccacctatccctctggaaacgaacaa
ggcacgaccaccctcatcatgcttgccaagcctaagaactcagccaaggtggtgacagtc
caggccggcactaaatcggtggtggtagcccagtgcgaggcggcggagggcaaaccagca
gccaccatcaagtggctggcgtcagttggaggcaaccactcaaccagcaccacaaatggc
ccggacgggacggtgacggtacgcagcgagtatcgtctggttccaacaccgacggataac
ggcagagaggtgacctgcatggtcgaccagaggacacaggagcggccgtgggtctaccct
gttaaactctctgtggagtacccgccctctgtgtccatagagggatacgacaacaactgg
tacgtcggccgttcagatgccgcactcctctgcctggccaacgccaatcctgcacccacc
accatcacctggaccgcggcgtctggttctttgccagacacggtggtggtggacggcaac
aagctgatcgtgaggaaggtggacgacgcagtcaacaccacattcatctgtgaggtcaag
aacaagcacggagccagcaagcaccagatcaccaccatcgtcatcgcagaaaagagacaa
atcactccaggcccaccgacaggtgctgttattggtggtatcctgggcgccctcgccttc
atcggcatcatcgtcggcatcgtcttctacatccgcaagcgccaggaagacggagaaggc
cctcccaagcacaaaccccctccccctgtgaaggcaggcagctcaacagagatgctgaac
aagccatcagagcctcccacggccacagagacggcacctctcagcccaggagaggtttac
tatgagcccacggggagagagcctgtcacgaacctggatgatgagaccactggcgccttg
aatggcggcgcccctccagtcctggacgattcggccaaatacgacaacatcaacgaactc
aaagaccattccgccgacggtcaccacggcaacgacatggattcatccaatcacgagcca
ccggctgccaacatctctcgcggggagagcttcgtatctcccgccatgtatgtgtag
DBGET
integrated database retrieval system
