KEGG   Lates calcarifer (barramundi perch): 108882334
Entry
108882334         CDS       T04895                                 
Name
(RefSeq) RLA class II histocompatibility antigen, DP alpha-1 chain
  KO
K06752  MHC class II antigen
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04145  Phagosome
lcf04514  Cell adhesion molecules
lcf04672  Intestinal immune network for IgA production
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    108882334
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    108882334
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    108882334
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108882334
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108882334
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108882334
  Exosomal proteins of epithelial cells
   108882334
  Exosomal proteins of breast milk
   108882334
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 Ig_2 C2-set_3 I-set ig C2-set_2 SusE ICAM1_3_5_D2
Other DBs
NCBI-GeneID: 108882334
NCBI-ProteinID: XP_018530295
UniProt: A0A4W6G7R6
LinkDB
Position
Unknown
AA seq 242 aa
MMMMMMKVSELVLVLSCVLCVSADVFHEDLRIGGCSDTDGEEMYSLDGEEIWYADFINKR
GVEPQPSFIDHISYREGTYEVAEADQPICRSNLKNSRLGMKDIPVENDPPSSPMIYTRDK
VELGEKNTLICHVSGFYPAPVNVSWTKNEQKVTEGTSINVPFPLKDGSFRQTSRLEFIPQ
LGDVYTCTVRHPALNQPLTRIWDVEVQQPSIGPAVFCGVGLTVGLLGVAAGTFFLIKGNE
CS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgatgatgatgatgatgaaggtgtcagagctggtcctcgtcctctcctgtgtcctctgt
gtctctgctgacgttttccatgaggaccttcgtatcggcggctgttcagacactgatgga
gaggagatgtactctctggatggtgaagagatctggtacgcagacttcatcaacaagaga
ggagtcgagcctcagcccagttttattgatcatatcagctacagggaaggaacttatgaa
gtagctgaggctgatcaaccgatctgcagaagtaacctgaagaacagccgccttggtatg
aaggacatcccagtggaaaatgatcctccttccagtccaatgatctacaccagagacaaa
gtggagctgggagagaagaacactctgatctgtcatgtgtctggtttctatcctgctcct
gtcaacgtctcctggaccaagaacgaacagaaggtgactgaaggaaccagcatcaacgtc
ccctttccactcaaagatggttccttcagacagacgtccagactggagttcatcccacag
ctgggagacgtctacacctgcacagtgagacacccagctctgaaccaaccactgaccaga
atctgggatgtggaggtgcagcagcccagtattggacctgcagtcttctgtggagtgggt
ctgactgtcggtctgctcggtgtcgctgcaggaaccttcttcctcatcaaaggaaacgag
tgcagctga

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