Lates calcarifer (barramundi perch): 108882654
Help
Entry
108882654 CDS
T04895
Symbol
itchb
Name
(RefSeq) itchy E3 ubiquitin protein ligase b
KO
K05632
E3 ubiquitin-protein ligase Itchy [EC:
2.3.2.26
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04144
Endocytosis
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108882654 (itchb)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108882654 (itchb)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108882654 (itchb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108882654 (itchb)
04121 Ubiquitin system [BR:
lcf04121
]
108882654 (itchb)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108882654 (itchb)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108882654 (itchb)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
HECT type E3
108882654 (itchb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
108882654
NCBI-ProteinID:
XP_018530815
UniProt:
A0A4W6CVR3
LinkDB
All DBs
Position
LG6:5466488..5489775
Genome browser
AA seq
887 aa
AA seq
DB search
MASGVTRSGTSNGYPMKAQLQIIVLSAKLKENKKNWFGPSPYVEVTVEGQSKKTEKCNNT
HSPKWKQPLTVIVTPFSKLSFRVWSHQTLKSDVLLGMATLDISDTLKANDMKISEVVQTL
QLCADRDQSDVVGDLSVCLDGMTVDPEMFAMAKADHHSTSNGESQPNGDHAMPKHSRDSS
PAVDGVDHKSSPSGLRSVNSTGSPIVSLGVSKPLRPPRPSRPPPPTPRRPTSSPASSSNG
SAPADGSDGQSGSDTPVRTPASGPSSTPDSSPSAGSDRNSTPASSSGATATRQPTITPVV
TPRVPAVNAGPLPPGWEQRVDQNGRVYFVDHVEKRTTWERPEPLPPGWERRVDQMGRVYF
VDHITRTTTWQRPTMETVRNYEQWQHQRSQLQGAMQQFNQRFIFGLQDQVSATQNKEFDP
LGPLPHGWEKRTDTNGRVYFVHHPTRSTQWEDPRTQGLLNEKPLPEGWEMRFTVDGIPYF
VDHNRRTTTYIDPRTGKSSLENGPQITYVRDFKAKVQYFRFWCQQLSLPQHIKITVSRKT
LFEDSFQQIMSFNAQDLRRRLWIIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG
KDNYCLQINPASYINPDHLKYFKFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPLALKD
LESIDPEFYNSLIWIKDNDIEECGLEMFFSVDKEILGEITTHELKPGGGDIQVTEENKEE
YIRLVAEWRLSRGVEEQTQAFFEGFNEVLPQQYLQYFDAKELEVMLCGMQEIDLADWQRN
TIYRHYARSSKQIIWFWQFIKEMDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCI
EKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLMFAIEETEGFGQE
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggccagtggagtcaccaggtcgggtacctccaatggctaccctatgaaggcacaactg
caaatcattgtgctctcagcaaaactgaaagagaacaagaaaaactggtttggtcccagt
ccttatgtggaagtgacagtcgaaggccagtccaagaaaacagagaaatgcaacaacacc
cacagccccaagtggaagcagccgctcactgtgatcgtgactccattcagcaaactctcg
tttcgcgtgtggagccaccagaccctaaagtcggacgtgttgctgggcatggccacgctg
gacatcagtgacacgctcaaggctaatgacatgaaaatctctgaggtggtgcagacctta
cagctgtgtgcagacagagatcagtcagatgtggtgggagatctgtctgtctgcctggac
ggcatgaccgttgaccctgagatgtttgccatggccaaggctgaccatcacagtacatca
aatggggaatcacagcctaatggagatcatgccatgccaaagcacagtcgagacagctct
ccagctgtggatggtgtggatcataagtcttctcccagtggcttgaggtcggtgaacagc
actgggtctcccatagtgtcattaggggtctcgaagcctctccgaccacctaggccctcc
agacctcctcctccaaccccccgcagacccacctcttcaccagcatcttccagcaacggc
tctgcaccagctgatggcagtgatgggcagtcaggttctgatacacctgtacgaacaccg
gcctcaggaccctcatcaaccccagactcaagtccgtcagcaggctcagacagaaactcc
acaccggcctccagctctggagctacagcaaccagacagccaaccatcacccctgtggtc
actcccagggtccctgctgtcaacgctgggccgttaccccctgggtgggaacagagagtg
gatcagaacggcagggtctattttgtcgaccatgtggaaaagaggacaacatgggaacgc
cctgaaccattgcctcctggctgggagcgccgtgttgaccagatggggcgtgtctacttt
gttgaccacatcacacgaaccaccacgtggcagcgccccacaatggagacggtgcgtaac
tacgagcagtggcaacaccagcgaagccagctgcagggcgccatgcagcagttcaaccag
aggttcatattcgggctacaagaccaggtctcagccactcagaataaggagtttgatcct
ctcgggcctctgccacatggatgggagaagagaacggacaccaatggcagagtttatttt
gtacaccaccctacacggtcaacacagtgggaggacccgcgaacacaggggttgctcaat
gagaagccacttccagagggctgggagatgaggttcacagttgatggtattccctacttt
gtagaccacaacaggagaaccaccacttacatcgaccctcgcactggaaagtcctcactg
gaaaacggacctcagatcacctatgtccgagacttcaaagccaaagtacagtacttcaga
ttctggtgccagcaactgtcactgcctcaacacatcaagatcactgtatccagaaaaacc
ctgtttgaggactccttccaacagataatgagctttaatgctcaagatttgcgaaggaga
ctatggatcatcttccctggagaggagggcctcgattatggaggggttgccagggagtgg
ttcttccttttgtcccatgaggtcttgaaccccatgtactgcctgtttgaatatgccggt
aaagataactactgtctccagatcaaccctgcctcctacatcaaccctgaccatctcaag
tatttcaagttcataggacgcttcatcgccatggctcttttccatggcaagttcatcgac
actggtttctcactgccattttacaagcgcatccttaacaagcccttggccctcaaagat
ctggagtcaatagaccctgagttttacaactccctcatttggatcaaggataatgacatt
gaggagtgcgggctggagatgttcttctctgttgacaaagagatccttggggaaatcacc
acccatgagctgaaaccaggaggaggagacatccaagtcactgaggagaacaaggaggag
tacatcaggctggtagcagagtggaggctgtccagaggagtagaagagcagacacaggct
ttctttgaaggcttcaatgaggtcctccctcagcagtacctgcagtactttgatgccaaa
gagctggaggtaatgctgtgtggtatgcaggagattgaccttgcagattggcaaaggaac
actatctacagacattatgctcgcagcagcaaacagatcatctggttctggcagttcata
aaggagatggataatgagaagaggatgaggctgctgcagtttgtcactggcacctgtcgc
ctgcctgtaggaggctttgctgaccttatgggaagcaatggtcctcagaagttctgtatt
gagaaggtgggaaaagaaaactggcttcccagaagtcacacatgctttaacagactggac
ttgccgccctacaagagctacgagcagctaaaggagaagctgatgttcgccatcgaggag
acagagggcttcggacaggagtga
DBGET
integrated database retrieval system
