Lates calcarifer (barramundi perch): 108883400
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Entry
108883400 CDS
T04895
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1
KO
K20894
shank-associated RH domain-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04217
Necroptosis
lcf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108883400
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108883400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108883400
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
108883400
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Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
CATSPERB_Ig-like
Motif
Other DBs
NCBI-GeneID:
108883400
NCBI-ProteinID:
XP_018532002
UniProt:
A0AAJ7LW60
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Position
LG4:complement(10906389..10929747)
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AA seq
436 aa
AA seq
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MALSSGGWAPPAPAPASSQQAAVCGGPAPTVCCSTVLMSVRVSVCHSGIRPLCLPGAGSE
TLRLQLSMDPSRAGEFRLALRDMSGNRSVFIAEFDLRSVHYEVKSPRCHEMRLAAPPHDC
IRFNFRCDREAEEWATVVMSSLREAHRVANINTYESDGRQNHAAAAMEQWSSASLPLTEE
LCLELARAIEAGDTQAASQHASALARQKAVLTIQLSEKNYADGEISLSVVVEDVSSSCCV
TVKVFPYMTVAALKQQVFHEHGFHPRVQRWVIGQCLCTEPRSLASYGVQKDGDTAYLYLI
SARQARITRQLFQQDLESALLAPPLPPGNGPTSQDWRGYSTLPSRLPHNNQGSTGGGSER
PADIKDVLDIENLQLNDHNNKASKTQQTEWACPSCTFINKPSRPGCEICATARPDAHIQQ
EKGRREDRGESGLSSS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcactcagctcgggcggctgggctcctccagccccggctcctgcctcgtcccagcag
gctgctgtatgcggcgggcctgcgccaacggtttgctgcagtaccgttttaatgtcagtc
cgggtctcggtgtgccattccgggatccggcccctgtgcctccccggagcaggcagcgag
accctgcgccttcaactcagcatggacccgagccgggccggagagttcaggctggcgctg
cgagacatgagcggaaaccgcagtgtgttcattgcagagtttgatctgcgctcggtgcat
tatgaggtcaagtctcctcgctgccacgagatgcgtcttgctgctccgccccacgactgc
attcgcttcaacttccgctgcgaccgagaggccgaggagtgggccaccgtggtgatgtcg
tcactaagagaggcacatagagttgcaaatattaacacgtatgaatcagatggcagacag
aaccacgcagcagcagctatggaacagtggagctcagcctcgctgccgctcaccgaggag
ctgtgtttggaactcgccagggccattgaagcaggcgacactcaggccgcttcccagcat
gcatccgctctggctcgacaaaaagcggtgctgacaattcaactgtctgaaaagaactac
gccgacggagagatcagtttatctgtggtggtggaggatgtttcgtcatcctgttgcgtc
acggtgaaagtgtttccctacatgaccgtggctgcactcaagcaacaggtgtttcacgag
cacggtttccatccccgcgtgcagcgctgggtgatcggtcagtgtctgtgcactgagccg
agatcgttggcgtcctacggggtgcagaaggacggcgacacggcatacctctacttgatc
tctgcccgacaggcccgcattacccgccagctgttccagcaggacctggagagcgccctc
ctcgccccgcctctccccccaggcaacggacccacctcccaagattggaggggttacagc
accctgccctcaaggctaccccacaacaaccaggggagcacaggcggaggaagcgaaaga
ccagctgatatcaaagacgtcctcgacatagagaatctacaactgaatgatcacaacaac
aaagccagtaaaacacagcagacagagtgggcttgtccctcgtgcactttcatcaacaag
ccatctcgtccaggctgcgaaatctgcgccacagccagacccgacgcacacatccagcag
gagaaaggaaggagagaggaccggggagagtctggtttaagcagcagctga
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