Lates calcarifer (barramundi perch): 108884373
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Entry
108884373 CDS
T04895
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108884373
09123 Folding, sorting and degradation
03018 RNA degradation
108884373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108884373
03041 Spliceosome [BR:
lcf03041
]
108884373
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108884373
mRNA degradation factors
5'-3' decay
Lsm complex
108884373
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108884373
Complex C
U2 snRNP components
108884373
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
108884373
NCBI-ProteinID:
XP_018533744
UniProt:
A0AAJ7LW85
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Position
LG12:complement(2842771..2845689)
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AA seq
102 aa
AA seq
DB search
MADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagttgagcagcaaccgactacaaacacggtcgaggagccacttgatctg
atcagactcagtcttgatgagcggatctacgtcaagatgaggaacgacagggagctccgt
ggccgactgcatgcctacgatcagcacctgaacatgatcctgggtgacgtggaggagact
gtaacaacggtagagattgatgaggagacttatgaagaactctacaagtcgaccaagagg
aacatccccatgcttttcgtcagaggagatggcgtggtcctcgtagctccgcccctcagg
gtgggctaa
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