Lates calcarifer (barramundi perch): 108884446
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Entry
108884446 CDS
T04895
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108884446
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108884446
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
Motif
Other DBs
NCBI-GeneID:
108884446
NCBI-ProteinID:
XP_018533854
UniProt:
A0A4W6G783
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Position
LG23:8457285..8471119
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AA seq
1261 aa
AA seq
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MKDTEGEGGGGGGAKISKSEKDQSWIPKIIKKRVCTTFVEDSFSNGALCQCGGARDTHDS
VALGDYFSTAIVNHWDSAQHSSEYPTDAFGELQFAGASKRHSYFLRLSWDTPPSMVYTLM
TAHWGLPAPNLVVSVVGGEGRSKVKTWVREVLRQGLVKASQSTGAWILTAGLREGVGRCV
GEAVRDHATAASSVSLSKVVALGIAPWGLVHNRQQLVNPQGSFPAKYYVQNTSRDSCCLD
NNYQAFLLVDDGSVGRRGGETGFRAKLEDYISHQRTGIWGSGSIDIPVLCMLISGEASML
ERVDLSLKNSMPWLVLAGSGGVADFLSDILENLSSAPTPQSSGEGDGEAGASMDLKDRVA
ERVKKHFPSEAETDKLVERTLTIYQNRDLITIYHGEQEGPDDFDTVLLKTLVGASKHRAS
VDASPYNEELKLAVTWNRVDIAKSELFNGDIQWRYEDLEDSMTDALINDKPEFVRLFTEN
GLNILDYLTYGRLESLYRSVADGTLLYHLLQRHLVERLGTTAPAYAQSNQQGSPSKLSAE
KMQNGPVTEISLFEVSRVLELLMGDVCQPFYFDALGLENISSKRRALRRVSKLLRGDCPY
RERRCLYPWASLFIWAVLQNRSDMATFFWEMAGESVLSALSGCKILRELSKLEIETETKL
SMKELAQRFENLAHDVFSSCYRSNESRSFTLLIRQSPVWGGTTCLQMGMGADARLFFSND
GVQSLLSQIWWGDMKRNTEVWRLILTFFCPILCYTNLISFRKHDDQQQEEEGKPNEDGPG
RDSDSLYGTTVFSFSDIKHIEADTQEVHTPRMATIKGIPQTHRPPKRPFIVSRWRQFWFA
PVTSFLGNVLMYFLFLLLFAYVLLVDFKPPPPEGPAITEYVLYFWVFTIVCEEIRETFFL
GTMTLRQRIRVYIQDVWNKCDITAIILFIIGLICRMFHWSYEFGRDILCVDYMVFTLRLI
HIFAIHKQLGPKIIIVGKMMKDVFFFLFFLGVWLMAYGVANQALIYSYDPRLDRIFRRVF
YRPYLHIFGQIPVEEMDVGKEWDMPCTDNVTLIQDGAEPCRTLYSNWLVVILLVIYLLVT
NILLINLLIAMFSYTFSEVQANSDIYWKFQRYNLIVQYHSRPSLAPPFIILSHINLFIKR
TIRKVPSIKIHHFVLELKGKAANRLMTWETIQKEDFLTAQTKIQKSSDSERLKRMSVKVD
GVLKHLTESRDFDHRLRALENEMEYCSNALSWIVDTLAQGSTFKPPRPPPTLRDAFPSSS
T
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacacagaaggagaaggaggaggaggcggtggagctaaaatcagtaaatctgag
aaggaccagagctggatccccaagatcataaagaaaagagtgtgcaccacctttgtagag
gattctttcagtaatggagcgctttgccagtgtgggggtgcgagagacacccacgactct
gtggctctcggtgactatttcagcacggcgatcgtcaaccactgggacagcgcccagcac
tcctctgagtacccgactgacgcctttggggagctgcagtttgcaggagccagcaagagg
catagctattttctgcgtctgtcatgggacacacctccgtctatggtctataccctgatg
acagcccattggggcctgcctgcgcccaatctggtggtttctgtagtgggtggagaagga
aggtcaaaggtgaagacctgggtacgggaggtcctccggcagggtctggttaaagcctca
caaagcacaggagcgtggatcctgacggcaggcttgcgcgagggtgtagggaggtgtgtc
ggagaggctgtgagggatcacgccaccgcggcctcgtctgtgtccctcagcaaggtggtg
gcgctgggcatcgctccctggggcctggtgcacaaccgacagcagctggtcaaccctcag
ggtagcttccccgctaagtactatgtccagaacacgtcccgggactcctgctgcctcgac
aacaactaccaggccttcctgctggtggacgatgggagcgtgggacgcagaggaggagag
acagggttcagggccaaactggaggactatatctcccaccagcgtacaggcatctggggc
agtggcagcattgacatccctgtcctttgtatgctgatatctggggaggcaagcatgctg
gagagagtggatctgtccctgaaaaactccatgccctggctggtgctggctggctcagga
ggcgtggccgacttcctgagcgacatcttggagaacctgtcgtcagcccccacgccccag
tcttccggcgagggtgatggcgaggcgggtgccagcatggatctgaaagacagagtggca
gagcgggttaaaaagcacttcccgtctgaagcggagacggacaaactagtcgaacgaact
ctgaccatctaccagaaccgagatttgattacgatctaccacggagagcaggaaggccca
gatgactttgatactgtcctgctcaaaaccttagtgggagccagtaagcaccgtgcgtca
gttgatgccagcccttacaatgaagagctgaagctcgcggtcacgtggaacagggtcgac
attgccaagagcgaactcttcaacggagacatccagtggaggtatgaagacttggaggac
tcaatgacggatgccctgatcaatgacaagcctgagtttgtgcgtcttttcactgagaat
ggcctcaacatcctggactacctgacttatggcaggctggagagcctctaccgctcggtg
gctgacgggacgcttctttaccatctgctacagcgccacctcgtggagcgacttggaact
acagcacctgcttacgcacagtccaaccagcagggctcgccttccaaactgtcagcagag
aaaatgcagaatggtccggtgactgagatcagcctttttgaggtgtcacgggtcctggaa
ctgttaatgggtgatgtttgccagccattctactttgatgctttgggattagagaatatc
tcatccaagaggagggctcttcggcgtgtcagtaagctgcttcgtggagattgcccctat
cgggagagacgctgcctttacccctgggcctcgctcttcatctgggccgtcctgcagaac
cgcagcgacatggccacgttcttctgggaaatggcgggggagtcagtgctcagtgctctt
agtggctgtaagatcttgagagaactgtccaaactggagattgagactgagaccaaactc
tccatgaaagagctggcccagaggtttgagaacctggcacatgatgtcttcagctcttgc
tatcggagcaacgagagtcgctctttcaccctgttgattaggcagtctccggtctggggt
ggcaccacctgcctccagatgggcatgggtgctgatgcacggctttttttcagtaacgat
ggagtgcagtctctgttgtcccagatctggtggggtgacatgaagcggaacacagaggtg
tggagactcatactcaccttcttctgccccatcctctgctacaccaacttaatctccttc
aggaaacacgacgaccagcagcaagaggaggaggggaagcctaacgaggacggaccaggc
cgggacagcgacagcctctacggcaccaccgtcttctccttctctgacatcaagcacatt
gaagctgacacgcaagaagtgcacactcccagaatggcaaccatcaaaggcatacctcaa
actcacagacccccaaagcgtccattcatagtgtcgagatggcgccagttctggtttgca
cctgtcacctcatttttgggcaacgtcctgatgtacttcctcttcctgctgctttttgcc
tacgtgctgctggtggacttcaagccgcctccacccgaaggtccggccatcactgagtat
gtgctgtatttctgggtgttcaccatcgtgtgcgaggagatccgggagacattctttctg
gggacaatgacattgcgtcagaggattagagtgtacattcaggatgtgtggaacaagtgt
gacatcactgccatcatactgttcatcataggactaatctgcaggatgttccactggagt
tatgaattcggccgagacatcctgtgcgtggactacatggtcttcaccctccgcctcatt
cacatctttgccattcacaaacagctgggtccaaaaatcatcattgttggcaagatgatg
aaggatgttttcttcttcctcttcttcctgggggtgtggctcatggcgtatggagtagcc
aaccaggctttgatttattcttacgaccctcgcctcgatcgcatcttccgccgggttttc
tacaggccgtatttgcacatctttggacagatccctgtggaagagatggatgtggggaag
gagtgggacatgccttgcacagacaacgtgacactgatccaggacggcgcagagccatgc
agaaccctttacagtaactggctggtggtgattctgctggtcatttatctgctggtcacc
aacatcctgctcatcaacctgctcattgctatgtttagctacaccttctctgaggtgcaa
gcgaacagcgacatttactggaagttccagcgctacaacctgattgttcagtaccactcc
cgtccttccctggcgcctcctttcatcatcctctctcacatcaatctctttatcaagagg
accatccgcaaggtgccctcgatcaagatccaccattttgtattggagttaaaagggaaa
gcggctaacaggctaatgacatgggaaaccattcagaaggaggacttcctgactgcacag
accaagatccaaaaaagcagtgactcagagaggctaaaacggatgtctgtcaaagtggat
ggtgtgcttaaacatctgactgaaagcagagactttgaccacaggctaagggctctggag
aatgagatggagtactgctcaaatgctctcagctggattgtggatactctggcacaaggc
agcacgttcaaacctcctcggcctccacctacattaagagatgcattcccatccagttcc
acctga
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