Lates calcarifer (barramundi perch): 108884873
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Entry
108884873 CDS
T04895
Name
(RefSeq) ATP-dependent RNA helicase A
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108884873
03012 Translation factors [BR:
lcf03012
]
108884873
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108884873
5.6.2.6 RNA 3'-5' helicase
108884873
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108884873
Translation factors [BR:
lcf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108884873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
nSTAND3
AAA_19
AAA_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
108884873
NCBI-ProteinID:
XP_018534498
UniProt:
A0A4W6CF28
LinkDB
All DBs
Position
LG4:842821..854520
Genome browser
AA seq
1313 aa
AA seq
DB search
MADIKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFMCEVRVDGFNYIGMGNSTNKKDAQTN
AARDFVNYLVRVGEMNAAEVPALGVSAPDRDQPDGGGGGGGGGGGGGSFGNLPSGSPPPP
HLVVKTEKEEGSSCGPVPGVTGLGYSGGGNSGWGGGGGAAQWDRGANLKEYYAKKEEQEV
QATLESEEVDLNANLHGNWTLENAKARLNQFFQKEKTSAEYKYSQVGPDHNRSFIAEMQL
FVRQLGRKITAREHGSNKKLAAQSCALSLIRQLYHLGVIEAYSGVTKKKEGETLEAFEVN
VSPELQQQLNSVVQELGVQVPPPPADPSSSVSLVQAKMATFEPSQRQSGAGVVPWSPPQV
NWNPWTSSNIDEGPLAFCTPEQISSDLHDELMFQLEHDDNLQKILIGRDQLPVKHFEEEI
MAAVDNNPVVIIRGATGCGKTTQVPQYILDRFIKGGRASDCNIVVTQPRRISAVSVAERV
AYERGEDLGTSCGYSVRFESVLPRPHASILFCTVGVLLRKLEAGIRGISHVIVDEIHERD
INTDFLMVVLRDVVQAYPEVRVILMSATIDTTMFREYFFNCPIIEVFGRTFPVQEYFLED
CIQMTNFIPPPVDRKKKDKDEDGGDDDTNCNVICGSEYTAETKHSMSQINEKEMSFELVD
ALLKYIETLQVAGAVLVFLPGWNLIYSMQRYLETNPHFGSNRYRILPLHSQIPREEQRRV
FEPVPDNITKVILSTNIAETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWASKTNL
EQRKGRAGRVRPGFCFHLCSRARFERMETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLS
KAIEPPPLDAVIEAEHTLRELDALDTNDELTPLGRVLARLPIEPRLGKMMIMGCIFHVGD
AMCTISAASCFPEPFINEGKRLSFVHRNFAGSRFSDHVALLSVFQAWDDVRINGEEAETR
FCEHKRLNMSTLRMTWEAKVQLKEILVNSGFPEESLMTQMFNTVGPDNNLDVVVSLLTFG
SYPNVCYHKEKRKILTTEGRNALIHKSSVNCPFSSQDLTYPSPFFVFSEKIRTRAISAKG
MTLVSPLQLLLFACKKINSNGDVVELDDWIKLRIPHEVAGGIVALRAGLEALVVEVTKDP
EYIRQLDQSNQRLLNLIRHISRPSAAGLNLMSSTHRMGDGPRPPKMGRFDGGGAGGGGYR
GGGGYGGGGGGGGGYRGGGGYGGGGGGGGGYRGGGGYGGYRGGGYRGGGYRGGGGYRGGG
GYRGGGGYGGGGGYRGGGGGGYRGGGGGGYRGGGGGGYRGGGGGGGGGYRGGY
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggcagacatcaagaacttcctgtacgcctggtgtggcaaaaagaagctgactcccaac
tacgacatccgagcagcagggaacaagaacaggcagaagtttatgtgtgaggtccgagtc
gacggctttaactacatcgggatgggaaactccaccaacaagaaggacgctcagaccaac
gctgccagggactttgtcaactacctggtccgagtcggggaaatgaacgcagcagaggtt
ccagctctgggggtgagcgctccagacagggatcagcctgatggaggaggaggaggagga
ggaggaggaggaggaggaggcagctttggaaacctcccctctggaagtcctccgcctcct
caccttgtagtgaagactgagaaagaggagggcagcagctgtggaccggttccaggagtg
acaggactgggttactcaggaggaggaaactctgggtggggaggaggaggaggagcagct
cagtgggaccgaggagccaacctgaaggagtactacgccaagaaagaggagcaggaagtg
caggcgactctggagtcggaggaggtggacctgaacgctaaccttcacggtaactggacc
ctggagaacgccaaggcccgtctgaaccagttcttccagaaggagaaaaccagcgctgag
tataaatacagccaagtgggaccggaccacaacaggagcttcatagcggagatgcagctg
tttgtcagacagctcggcagaaagatcacggctcgagaacacggctccaacaagaagctg
gcggctcagtcgtgcgctctgtctctgatccgacagctgtatcacctgggcgtcatcgag
gcgtactccggagtcaccaagaagaaggagggagaaactttggaggcgtttgaggtcaac
gtgtctccagagcttcagcagcagctgaacagcgtcgtccaggagctcggagtccaggtc
cctccaccgcccgcagaccccagcagctcagtgtctctggttcaggccaagatggcgacg
ttcgaaccatcgcagcgtcagagcggagccggggtcgtgccctggtcgccacctcaggtc
aactggaacccctggaccagcagcaacatcgacgaggggccgctggccttctgcactcca
gagcagatcagcagcgacctgcacgacgagctgatgttccagctggagcatgacgacaac
ctgcagaagatcctgatcggccgcgaccagctgcccgtcaaacactttgaagaggagatc
atggcggccgtggacaacaaccccgtggtgatcatcagaggagcgacgggctgtggtaaa
accactcaggtccctcagtacatcctggaccgcttcatcaagggaggccgagcatccgac
tgcaacattgtggtcacccagcccagacggatcagcgcggtgtccgtggctgagagagtc
gcctacgagcggggggaggacctcgggacgagctgcggctacagcgtccgcttcgagtcc
gtcctccctcgacctcacgccagcatcctcttctgcaccgttggggttttgctgcggaag
cttgaagcaggaatcagaggcatcagccacgtcatcgtggatgaaatccacgagagagac
atcaacacggacttcctgatggtggtgctcagagacgtggtccaggcctatcccgaggtc
cgcgtcatcctcatgtcggccaccatcgacaccaccatgttcagagaatacttcttcaac
tgtcccatcatcgaggtgttcggacgaaccttccctgttcaagagtatttcctggaggat
tgtatccaaatgaccaacttcattcctccaccggtggacagaaagaagaaagacaaagac
gaggacggaggagacgatgacaccaactgtaatgtgatctgtggctccgagtacacggca
gagacgaagcattcgatgtctcagatcaacgagaaggagatgtccttcgagctggtcgat
gctctgctcaagtacatcgagacgctgcaggtggccggagccgtgctcgtcttcctgccc
ggctggaacctcatctactccatgcagagatacctggagaccaacccccactttggaagt
aaccggtaccggatcctgccgctccactctcagatcccccgtgaggagcagaggagggtg
tttgaaccggttcctgacaacatcacaaaggtgatcctgtccaccaacatcgcagagacc
agcatcaccatcaacgacgtcgtctacgtcatcgactcctgcaagcagaaggtgaagctc
ttcacctcccacaacaacatgaccaactacgccacagtctgggcctccaagaccaacctg
gagcagaggaagggccgagccggccgagtccgacccgggttctgtttccacctctgcagc
cgcgctcgctttgagaggatggagactcacatgactccggagatcttcaggactccgctg
cacgaagtcgccctgagcatcaaactgctgagactcggagccatcggacacttcctgtcc
aaggccatcgagccgccgccgctggacgccgtcatcgaggctgagcacacgctgagagag
ctggatgctctggacactaacgacgagctgactcctctgggtcgggttctggctcgactc
cccatcgagcctcgactggggaagatgatgatcatgggctgcatcttccatgtcggagac
gcgatgtgcaccatctcagccgcctcctgtttcccggagccgttcattaacgaggggaaa
cgtctcagcttcgtccacaggaactttgccggcagccgtttctctgatcacgtggctctg
ctgtcggtgttccaggcctgggacgacgtcaggattaacggagaggaggctgagactcgt
ttctgtgaacacaaacgtctcaacatgtccactctcaggatgacctgggaggccaaagtc
cagctgaaggaaatcctggtcaactctggattccctgaagagagtctgatgactcagatg
ttcaacacagtgggacctgacaacaacctggacgtggtggtttccctgctcaccttcggc
tcctaccccaacgtctgttaccacaaagagaagaggaagatcctgaccacagagggacgc
aacgccctcatccacaaatcctccgtcaactgtccgttcagcagccaggacctgacctac
ccctcccccttcttcgtcttcagtgagaagatccggaccagggcgatctcggctaaaggg
atgactctggtcagtcctctgcagctgctgctcttcgcctgtaagaagatcaactctaac
ggagacgtggtggagctcgacgactggatcaaactgaggatccctcacgaggtggcgggg
ggcatcgtggctctgagggccgggctggaggctctggtggtggaggtgaccaaagatcca
gaatacatcagacaactggaccagagcaaccagaggctgctgaacctcatcagacacatc
tccagaccgtcagcagccggactcaacctgatgagcagcacacacaggatgggagacggc
cctcgacctccgaagatgggacgctttgatggaggaggagcaggagggggtggatacagg
ggaggtgggggttacggaggaggaggaggaggaggaggaggttacaggggaggtgggggt
tacggaggaggaggaggaggaggaggaggttacaggggaggtgggggttatgggggttac
agaggaggaggatatagaggagggggatacagaggaggaggaggttatagaggtggagga
ggctacagaggagggggaggatatggaggaggtgggggctacagaggaggaggaggagga
ggatacagaggaggaggaggaggaggatacagaggaggaggaggaggaggatacagagga
ggaggaggaggaggtggaggagggtacagaggaggttattaa
DBGET
integrated database retrieval system
