Lates calcarifer (barramundi perch): 108885399
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Entry
108885399 CDS
T04895
Symbol
cxcl12b
Name
(RefSeq) chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04060
Cytokine-cytokine receptor interaction
lcf04672
Intestinal immune network for IgA production
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108885399 (cxcl12b)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108885399 (cxcl12b)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108885399 (cxcl12b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
lcf04052
]
108885399 (cxcl12b)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108885399 (cxcl12b)
Cytokines and neuropeptides [BR:
lcf04052
]
Cytokines
Chemokines
108885399 (cxcl12b)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Chemokines
108885399 (cxcl12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
108885399
NCBI-ProteinID:
XP_018535258
UniProt:
A0A4W6DFV9
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Position
LG5:21308616..21321781
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AA seq
102 aa
AA seq
DB search
MDVKLLALMALLAVATHVPTSSAKPISLVERCWCRSTLNTVPQRAIKELKFLHTPNCPFQ
VIAKLKNNREVCINPETKWLQQYLKNAINKVKKSRRRNNKKN
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaaactgctggcactgatggctctgctggccgtggccacacatgtaccaacc
tccagtgcaaagcccatcagtctggtcgagcggtgttggtgtcgttccaccctcaacacg
gttcctcagcgcgccatcaaagagctcaagttcctccacacacccaactgccccttccaa
gtcattgccaagctgaagaacaacagggaagtttgcatcaacccagagaccaagtggctg
cagcagtacttaaagaacgccattaacaaggtgaagaaatccagaagacgcaataacaag
aaaaactaa
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